The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms

Motohiko Tanino; Marie Anne Debily; Takuro Tamura; Teruyoshi Hishiki; Osamu Ogasawara; Katsuji Murakawa; Shoko Kawamoto; Kouichi Itoh; Shinya Watanabe; Sandro José de Souza; Sandrine Imbeaud; Esther Graudens; Eric Eveno; Phillip Hilton; Yukio Sudo; Janet Kelso; Kazuho Ikeo; Tadashi Imanishi; Takashi Gojobori; Charles Auffray; Winston Hide; Kousaku Okubo

doi:10.1093/nar/gki104

The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms

Motohiko Tanino^*, Marie Anne Debily, Takuro Tamura, Teruyoshi Hishiki, Osamu Ogasawara, Katsuji Murakawa, Shoko Kawamoto, Kouichi Itoh, Shinya Watanabe, Sandro José de Souza, Sandrine Imbeaud, Esther Graudens, Eric Eveno, Phillip Hilton, Yukio Sudo, Janet Kelso, Kazuho Ikeo, Tadashi Imanishi, Takashi Gojobori, Charles AuffrayWinston Hide, Kousaku Okubo

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

15 Scopus citations

Abstract

The Human Anatomic Gene Expression Library (H-ANGEL) is a resource for information concerning the anatomical distribution and expression of human gene transcripts. The tool contains protein expression data from multiple platforms that has been associated with both manually annotated full-length cDNAs from H-InvDB and RefSeq sequences. Of the H-Inv predicted genes, 18 897 have associated expression data generated by at least one platform. H-ANGEL utilizes categorized mRNA expression data from both publicly available and proprietary sources. It incorporates data generated by three types of methods from seven different platforms. The data are provided to the user in the form of a web-based viewer with numerous query options. H-ANGEL is updated with each new release of cDNA and genome sequence build. In future editions, we will incorporate the capability for expression data updates from existing and new platforms. H-ANGEL is accessible at http://www.jbirc.aist.go.jp/hinv/h-angel/.

Original language	English (US)
Pages (from-to)	D567-D572
Journal	NUCLEIC ACIDS RESEARCH
Volume	33
Issue number	DATABASE ISS.
DOIs	https://doi.org/10.1093/nar/gki104
State	Published - Jan 1 2005
Externally published	Yes

Bibliographical note

Funding Information:
The authors are grateful to Toshiya Yamamoto for developing the H-ANGEL database and interface. This research is financially supported by the Ministry of Economy, Trade and Industry of Japan (METI), the Ministry of Education, Culture, Sports, Science and Technology of Japan (MEXT), and the Japan Biological Informatics Consortium (JBIC).

ASJC Scopus subject areas

Genetics

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10.1093/nar/gki104

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Tanino, M., Debily, M. A., Tamura, T., Hishiki, T., Ogasawara, O., Murakawa, K., Kawamoto, S., Itoh, K., Watanabe, S., de Souza, S. J., Imbeaud, S., Graudens, E., Eveno, E., Hilton, P., Sudo, Y., Kelso, J., Ikeo, K., Imanishi, T., Gojobori, T., ... Okubo, K. (2005). The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms. NUCLEIC ACIDS RESEARCH, 33(DATABASE ISS.), D567-D572. https://doi.org/10.1093/nar/gki104

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title = "The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms",

abstract = "The Human Anatomic Gene Expression Library (H-ANGEL) is a resource for information concerning the anatomical distribution and expression of human gene transcripts. The tool contains protein expression data from multiple platforms that has been associated with both manually annotated full-length cDNAs from H-InvDB and RefSeq sequences. Of the H-Inv predicted genes, 18 897 have associated expression data generated by at least one platform. H-ANGEL utilizes categorized mRNA expression data from both publicly available and proprietary sources. It incorporates data generated by three types of methods from seven different platforms. The data are provided to the user in the form of a web-based viewer with numerous query options. H-ANGEL is updated with each new release of cDNA and genome sequence build. In future editions, we will incorporate the capability for expression data updates from existing and new platforms. H-ANGEL is accessible at http://www.jbirc.aist.go.jp/hinv/h-angel/.",

author = "Motohiko Tanino and Debily, {Marie Anne} and Takuro Tamura and Teruyoshi Hishiki and Osamu Ogasawara and Katsuji Murakawa and Shoko Kawamoto and Kouichi Itoh and Shinya Watanabe and {de Souza}, {Sandro Jos{\'e}} and Sandrine Imbeaud and Esther Graudens and Eric Eveno and Phillip Hilton and Yukio Sudo and Janet Kelso and Kazuho Ikeo and Tadashi Imanishi and Takashi Gojobori and Charles Auffray and Winston Hide and Kousaku Okubo",

note = "Funding Information: The authors are grateful to Toshiya Yamamoto for developing the H-ANGEL database and interface. This research is financially supported by the Ministry of Economy, Trade and Industry of Japan (METI), the Ministry of Education, Culture, Sports, Science and Technology of Japan (MEXT), and the Japan Biological Informatics Consortium (JBIC).",

year = "2005",

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doi = "10.1093/nar/gki104",

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Tanino, M, Debily, MA, Tamura, T, Hishiki, T, Ogasawara, O, Murakawa, K, Kawamoto, S, Itoh, K, Watanabe, S, de Souza, SJ, Imbeaud, S, Graudens, E, Eveno, E, Hilton, P, Sudo, Y, Kelso, J, Ikeo, K, Imanishi, T, Gojobori, T, Auffray, C, Hide, W & Okubo, K 2005, 'The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms', NUCLEIC ACIDS RESEARCH, vol. 33, no. DATABASE ISS., pp. D567-D572. https://doi.org/10.1093/nar/gki104

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AU - Debily, Marie Anne

AU - Tamura, Takuro

AU - Hishiki, Teruyoshi

AU - Ogasawara, Osamu

AU - Murakawa, Katsuji

AU - Kawamoto, Shoko

AU - Itoh, Kouichi

AU - Watanabe, Shinya

AU - de Souza, Sandro José

AU - Imbeaud, Sandrine

AU - Graudens, Esther

AU - Eveno, Eric

AU - Hilton, Phillip

AU - Sudo, Yukio

AU - Kelso, Janet

AU - Ikeo, Kazuho

AU - Imanishi, Tadashi

AU - Gojobori, Takashi

AU - Auffray, Charles

AU - Hide, Winston

AU - Okubo, Kousaku

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The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms

Abstract

Bibliographical note

ASJC Scopus subject areas

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