Ssecrett and neuroTrace: Interactive visualization and analysis tools for large-scale neuroscience data sets

Wonki Jeong; Johanna Beyer; Markus Hadwiger; Rusty Blue; Charles Law; Amelio Vázquez Reina; Rollie Clay Reid; Jeff W M D Lichtman; Hanspeter Pfister

doi:10.1109/MCG.2010.56

Ssecrett and neuroTrace: Interactive visualization and analysis tools for large-scale neuroscience data sets

Wonki Jeong, Johanna Beyer, Markus Hadwiger, Rusty Blue, Charles Law, Amelio Vázquez Reina, Rollie Clay Reid, Jeff W M D Lichtman, Hanspeter Pfister

Research output: Contribution to journal › Article › peer-review

61 Scopus citations

Abstract

Recent advances in optical and electron microscopy let scientists acquire extremely high-resolution images for neuroscience research. Data sets imaged with modern electron microscopes can range between tens of terabytes to about one petabyte. These large data sizes and the high complexity of the underlying neural structures make it very challenging to handle the data at reasonably interactive rates. To provide neuroscientists flexible, interactive tools, the authors introduce Ssecrett and NeuroTrace, two tools they designed for interactive exploration and analysis of large-scale optical- and electron-microscopy images to reconstruct complex neural circuits of the mammalian nervous system. © 2010 IEEE.

Original language	English (US)
Pages (from-to)	58-70
Number of pages	13
Journal	IEEE Computer Graphics and Applications
Volume	30
Issue number	3
DOIs	https://doi.org/10.1109/MCG.2010.56
State	Published - May 6 2010

Bibliographical note

KAUST Repository Item: Exported on 2020-10-01

ASJC Scopus subject areas

Computer Graphics and Computer-Aided Design
Software

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10.1109/MCG.2010.56

https://repository.kaust.edu.sa/bitstream/10754/561469/1/Articlefile1.pdf

Cite this

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abstract = "Recent advances in optical and electron microscopy let scientists acquire extremely high-resolution images for neuroscience research. Data sets imaged with modern electron microscopes can range between tens of terabytes to about one petabyte. These large data sizes and the high complexity of the underlying neural structures make it very challenging to handle the data at reasonably interactive rates. To provide neuroscientists flexible, interactive tools, the authors introduce Ssecrett and NeuroTrace, two tools they designed for interactive exploration and analysis of large-scale optical- and electron-microscopy images to reconstruct complex neural circuits of the mammalian nervous system. {\textcopyright} 2010 IEEE.",

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AU - Jeong, Wonki

AU - Beyer, Johanna

AU - Hadwiger, Markus

AU - Blue, Rusty

AU - Law, Charles

AU - Vázquez Reina, Amelio

AU - Reid, Rollie Clay

AU - Lichtman, Jeff W M D

AU - Pfister, Hanspeter

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Ssecrett and neuroTrace: Interactive visualization and analysis tools for large-scale neuroscience data sets

Abstract

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ASJC Scopus subject areas

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