Segmentation and tracking of 3D neuron microscopy images using a PDE based method and connected component labeling algorithm

Yalin Wang; Ilhwan Jo; Stephen Wong; Shing Tung Yau; Tony F. Chan

doi:10.1109/LSSA.2006.250432

Segmentation and tracking of 3D neuron microscopy images using a PDE based method and connected component labeling algorithm

Yalin Wang^*, Ilhwan Jo, Stephen Wong, Shing Tung Yau, Tony F. Chan

^*Corresponding author for this work

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Scopus citations

Abstract

In this paper we introduce our preliminary research results for segmentation and labeling of 3-dimensional microscopy neuron image, We segment each of stacked 2-dimensional image slices using a Partial Differential Equation (PDE) based algorithm and project previous slice segmentation result to the next slide as an initialization condition. Then we label neurons using an efficient connected component labeling algorithm. We show sample results obtained from real neuron image data.

Original language	English (US)
Title of host publication	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006
DOIs	https://doi.org/10.1109/LSSA.2006.250432
State	Published - 2006
Externally published	Yes
Event	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006 - Bethesda, MD, United States Duration: Jul 13 2006 → Jul 14 2006

Publication series

Name	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006

Conference

Conference	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006
Country/Territory	United States
City	Bethesda, MD
Period	07/13/06 → 07/14/06

ASJC Scopus subject areas

Health(social science)
Assessment and Diagnosis
General Medicine
Health Information Management
Electrical and Electronic Engineering
Human-Computer Interaction
Computer Science Applications
Signal Processing

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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10.1109/LSSA.2006.250432

Cite this

Wang, Y., Jo, I., Wong, S., Yau, S. T., & Chan, T. F. (2006). Segmentation and tracking of 3D neuron microscopy images using a PDE based method and connected component labeling algorithm. In 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006 Article 4015833 (2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006). https://doi.org/10.1109/LSSA.2006.250432

@inproceedings{b01b22535cf8473e93b597d5c693f7a1,

title = "Segmentation and tracking of 3D neuron microscopy images using a PDE based method and connected component labeling algorithm",

abstract = "In this paper we introduce our preliminary research results for segmentation and labeling of 3-dimensional microscopy neuron image, We segment each of stacked 2-dimensional image slices using a Partial Differential Equation (PDE) based algorithm and project previous slice segmentation result to the next slide as an initialization condition. Then we label neurons using an efficient connected component labeling algorithm. We show sample results obtained from real neuron image data.",

author = "Yalin Wang and Ilhwan Jo and Stephen Wong and Yau, {Shing Tung} and Chan, {Tony F.}",

year = "2006",

doi = "10.1109/LSSA.2006.250432",

language = "English (US)",

isbn = "1424402786",

series = "2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006",

booktitle = "2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006",

note = "2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006 ; Conference date: 13-07-2006 Through 14-07-2006",

}

Wang, Y, Jo, I, Wong, S, Yau, ST & Chan, TF 2006, Segmentation and tracking of 3D neuron microscopy images using a PDE based method and connected component labeling algorithm. in 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006., 4015833, 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006, 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006, Bethesda, MD, United States, 07/13/06. https://doi.org/10.1109/LSSA.2006.250432

Segmentation and tracking of 3D neuron microscopy images using a PDE based method and connected component labeling algorithm. / Wang, Yalin; Jo, Ilhwan; Wong, Stephen et al.
2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006. 2006. 4015833 (2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

TY - GEN

T1 - Segmentation and tracking of 3D neuron microscopy images using a PDE based method and connected component labeling algorithm

AU - Wang, Yalin

AU - Jo, Ilhwan

AU - Wong, Stephen

AU - Yau, Shing Tung

AU - Chan, Tony F.

PY - 2006

Y1 - 2006

N2 - In this paper we introduce our preliminary research results for segmentation and labeling of 3-dimensional microscopy neuron image, We segment each of stacked 2-dimensional image slices using a Partial Differential Equation (PDE) based algorithm and project previous slice segmentation result to the next slide as an initialization condition. Then we label neurons using an efficient connected component labeling algorithm. We show sample results obtained from real neuron image data.

AB - In this paper we introduce our preliminary research results for segmentation and labeling of 3-dimensional microscopy neuron image, We segment each of stacked 2-dimensional image slices using a Partial Differential Equation (PDE) based algorithm and project previous slice segmentation result to the next slide as an initialization condition. Then we label neurons using an efficient connected component labeling algorithm. We show sample results obtained from real neuron image data.

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U2 - 10.1109/LSSA.2006.250432

DO - 10.1109/LSSA.2006.250432

M3 - Conference contribution

AN - SCOPUS:37649032522

SN - 1424402786

SN - 9781424402786

T3 - 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006

BT - 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006

T2 - 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006

Y2 - 13 July 2006 through 14 July 2006

ER -

Segmentation and tracking of 3D neuron microscopy images using a PDE based method and connected component labeling algorithm

Abstract

Publication series

Conference

ASJC Scopus subject areas

UN SDGs

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