Abstract
We propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and LongQC covers all major TGS platforms. LongQC processes and visualizes those statistics automatically and quickly.
| Original language | English (US) |
|---|---|
| Pages (from-to) | g3.400864.2019 |
| Journal | G3 (Bethesda, Md.) |
| Volume | 10 |
| Issue number | 4 |
| DOIs | |
| State | Published - Feb 12 2020 |
Bibliographical note
KAUST Repository Item: Exported on 2020-10-01Acknowledgements: This work was supported by Core Labs of King Abdullah University of Science and Technology.
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Supplemental Material for LongQC: A quality control tool for third generation sequencing long read data, 2020
Fukasawa, Y. (Creator), Ermini, L. (Creator), Wang, H. (Creator), Carty, K. (Creator), Cheung, M. S. (Creator) & Carty, K. (Creator), GSA Journals, 2020
DOI: 10.25387/g3.11516004.v1, http://hdl.handle.net/10754/665086
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