Investigation of the Transcriptome of Prairie Cord Grass, a New Cellulosic Biomass Crop

Kristene Gedye, Jose Gonzalez-Hernandez, Yuguang Ban, Xijin Ge, Jyothi Thimmapuram, Fengjie Sun, Chris Wright, Shahjahan Ali, Arvid Boe, Vance Owens

Research output: Contribution to journalArticlepeer-review

18 Scopus citations


Prairie cordgrass (Spartina pectinata Bosc ex Link) is being developed as a cellulosic biomass crop. Development of this species will require numerous steps, including breeding, agronomy, and characterization of the species genome. The research in this paper describes the first investigation of the transcriptome of prairie cordgrass via Next Generation Sequencing Technology, 454 GS FLX. A total of 556,198 expressed sequence tags (ESTs) were produced from four prairie cordgrass tissues: roots, rhizomes, immature inflorescence, and hooks. These ESTs were assembled into 26,302 contigs and 71,103 singletons. From these data were identified, EST-SSR (simple sequence repeat) regions and cell wall biosynthetic pathway genes suitable for the development of molecular markers which can aid the breeding process of prairie cordgrass by means of marker assisted selection.
Original languageEnglish (US)
Pages (from-to)69-80
Number of pages12
JournalThe Plant Genome Journal
Issue number2
StatePublished - Oct 1 2010

Bibliographical note

KAUST Repository Item: Exported on 2020-10-01
Acknowledgements: The authors acknowledge support from the Joint USDA-DOE Feedstock Genomics program (grant# 2007-35504-18236), the Center of Excellence in Drought Tolerance through the South Dakota 2010 Initiative, and the South Dakota Agri. Exp. Station.


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