Human genome network platform: A resource for TFRN analysis

Norikazu Monma; Takashi Gojobori; Kazuho Ikeo

doi:10.1007/978-1-4939-0805-9_12

Human genome network platform: A resource for TFRN analysis

Norikazu Monma, Takashi Gojobori, Kazuho Ikeo

Research output: Contribution to journal › Article › peer-review

Abstract

Genome Network Project (GNP) (Carninci et al., Science 309:1559–1563, 2005) Platform was developed as an integrated database, opening to the public the research fi ndings within the GNP initiatives. Since the fi rst release in 2006, it has gained a large amount of access from all over the world with public favor. The platform is unique and useful in that various types of experimental data for transcriptome analysis are intensively collected, organized, integrated, and visualized with major public datasets; and it can be freely accessed through a single interface with advanced search functionalities. This chapter describes the outline of GNP Platform, mainly elaborating on gene description model GNP Platform employed, major functionalities the platform provides, and a few examples of exploring the GNP Platform.

Original language	English (US)
Pages (from-to)	147-162
Number of pages	16
Journal	Methods in Molecular Biology
Volume	1164
DOIs	https://doi.org/10.1007/978-1-4939-0805-9_12
State	Published - 2014

Bibliographical note

Publisher Copyright:
© Springer Science+Business Media New York 2014.

Keywords

CAGE
ChIP–chip
Gene expression
Integrated database
Microarray
PPI
TSS
Transcription factor

ASJC Scopus subject areas

Molecular Biology
Genetics

Access to Document

10.1007/978-1-4939-0805-9_12

Cite this

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abstract = "Genome Network Project (GNP) (Carninci et al., Science 309:1559–1563, 2005) Platform was developed as an integrated database, opening to the public the research fi ndings within the GNP initiatives. Since the fi rst release in 2006, it has gained a large amount of access from all over the world with public favor. The platform is unique and useful in that various types of experimental data for transcriptome analysis are intensively collected, organized, integrated, and visualized with major public datasets; and it can be freely accessed through a single interface with advanced search functionalities. This chapter describes the outline of GNP Platform, mainly elaborating on gene description model GNP Platform employed, major functionalities the platform provides, and a few examples of exploring the GNP Platform.",

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AU - Gojobori, Takashi

AU - Ikeo, Kazuho

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PY - 2014

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KW - Microarray

KW - PPI

KW - TSS

KW - Transcription factor

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Human genome network platform: A resource for TFRN analysis

Abstract

Bibliographical note

Keywords

ASJC Scopus subject areas

Access to Document

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