Hologenome analysis of two marine sponges with different microbiomes

Tae Woo Ryu; Loqmane Seridi; Lucas Moitinho-Silva; Matthew Oates; Yi Jin Liew; Charalampos Harris Mavromatis; Xiaolei Wang; Annika Haywood; Feras Fawzi Lafi; Marija Kupresanin; Rachid Sougrat; Majed A. Alzahrani; Emily Giles; Yanal Ghosheh; Celia Marei Schunter; Sebastian Baumgarten; Michael L. Berumen; Xin Gao; Manuel Aranda; Sylvain Foret; Julian Gough; Christian R. Voolstra; Ute Hentschel; Timothy Ravasi

doi:10.1186/s12864-016-2501-0

Hologenome analysis of two marine sponges with different microbiomes

Tae Woo Ryu, Loqmane Seridi, Lucas Moitinho-Silva, Matthew Oates, Yi Jin Liew, Charalampos Harris Mavromatis, Xiaolei Wang, Annika Haywood, Feras Fawzi Lafi, Marija Kupresanin, Rachid Sougrat, Majed A. Alzahrani, Emily Giles, Yanal Ghosheh, Celia Marei Schunter, Sebastian Baumgarten, Michael L. Berumen, Xin Gao, Manuel Aranda, Sylvain ForetJulian Gough, Christian R. Voolstra, Ute Hentschel, Timothy Ravasi

Research output: Contribution to journal › Article › peer-review

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Abstract

Background Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.

Original language	English (US)
Journal	BMC Genomics
Volume	17
Issue number	1
DOIs	https://doi.org/10.1186/s12864-016-2501-0
State	Published - Feb 29 2016

Bibliographical note

KAUST Repository Item: Exported on 2020-10-01
Acknowledgements: This work was supported by the King Abdullah University of Science and Technology. LMS was supported by a grant of the German Excellence Initiative to the Graduate School of Life Sciences, University of Wuerzburg. We thank the KAUST Core Lab for performing the sequencing and assisting with the genome-size analysis. We acknowledge Till Rothig (KAUST) for contributing to the sponge sample collection, Christine Gernert (University of Wurzburg) for assisting with the TEM analysis, and Sebastian Fraune (University of Kiel) for reading the manuscript critically. We also thank several anonymous reviewers for constructive comments.

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10.1186/s12864-016-2501-0

https://repository.kaust.edu.sa/bitstream/10754/600476/1/art3A10.11862Fs12864-016-2501-0.pdf

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Ryu, T. W., Seridi, L., Moitinho-Silva, L., Oates, M., Liew, Y. J., Mavromatis, C. H., Wang, X., Haywood, A., Lafi, F. F., Kupresanin, M., Sougrat, R., Alzahrani, M. A., Giles, E., Ghosheh, Y., Schunter, C. M., Baumgarten, S., Berumen, M. L., Gao, X., Aranda, M., ... Ravasi, T. (2016). Hologenome analysis of two marine sponges with different microbiomes. BMC Genomics, 17(1). https://doi.org/10.1186/s12864-016-2501-0

@article{6994f33ece4441d19eac8b59e8ac2820,

title = "Hologenome analysis of two marine sponges with different microbiomes",

abstract = "Background Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.",

author = "Ryu, {Tae Woo} and Loqmane Seridi and Lucas Moitinho-Silva and Matthew Oates and Liew, {Yi Jin} and Mavromatis, {Charalampos Harris} and Xiaolei Wang and Annika Haywood and Lafi, {Feras Fawzi} and Marija Kupresanin and Rachid Sougrat and Alzahrani, {Majed A.} and Emily Giles and Yanal Ghosheh and Schunter, {Celia Marei} and Sebastian Baumgarten and Berumen, {Michael L.} and Xin Gao and Manuel Aranda and Sylvain Foret and Julian Gough and Voolstra, {Christian R.} and Ute Hentschel and Timothy Ravasi",

note = "KAUST Repository Item: Exported on 2020-10-01 Acknowledgements: This work was supported by the King Abdullah University of Science and Technology. LMS was supported by a grant of the German Excellence Initiative to the Graduate School of Life Sciences, University of Wuerzburg. We thank the KAUST Core Lab for performing the sequencing and assisting with the genome-size analysis. We acknowledge Till Rothig (KAUST) for contributing to the sponge sample collection, Christine Gernert (University of Wurzburg) for assisting with the TEM analysis, and Sebastian Fraune (University of Kiel) for reading the manuscript critically. We also thank several anonymous reviewers for constructive comments.",

year = "2016",

month = feb,

day = "29",

doi = "10.1186/s12864-016-2501-0",

language = "English (US)",

volume = "17",

journal = "BMC Genomics",

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Ryu, TW, Seridi, L, Moitinho-Silva, L, Oates, M, Liew, YJ, Mavromatis, CH, Wang, X, Haywood, A, Lafi, FF, Kupresanin, M, Sougrat, R, Alzahrani, MA, Giles, E, Ghosheh, Y, Schunter, CM, Baumgarten, S, Berumen, ML , Gao, X , Aranda, M, Foret, S, Gough, J, Voolstra, CR, Hentschel, U & Ravasi, T 2016, 'Hologenome analysis of two marine sponges with different microbiomes', BMC Genomics, vol. 17, no. 1. https://doi.org/10.1186/s12864-016-2501-0

TY - JOUR

T1 - Hologenome analysis of two marine sponges with different microbiomes

AU - Ryu, Tae Woo

AU - Seridi, Loqmane

AU - Moitinho-Silva, Lucas

AU - Oates, Matthew

AU - Liew, Yi Jin

AU - Mavromatis, Charalampos Harris

AU - Wang, Xiaolei

AU - Haywood, Annika

AU - Lafi, Feras Fawzi

AU - Kupresanin, Marija

AU - Sougrat, Rachid

AU - Alzahrani, Majed A.

AU - Giles, Emily

AU - Ghosheh, Yanal

AU - Schunter, Celia Marei

AU - Baumgarten, Sebastian

AU - Berumen, Michael L.

AU - Gao, Xin

AU - Aranda, Manuel

AU - Foret, Sylvain

AU - Gough, Julian

AU - Voolstra, Christian R.

AU - Hentschel, Ute

AU - Ravasi, Timothy

N1 - KAUST Repository Item: Exported on 2020-10-01 Acknowledgements: This work was supported by the King Abdullah University of Science and Technology. LMS was supported by a grant of the German Excellence Initiative to the Graduate School of Life Sciences, University of Wuerzburg. We thank the KAUST Core Lab for performing the sequencing and assisting with the genome-size analysis. We acknowledge Till Rothig (KAUST) for contributing to the sponge sample collection, Christine Gernert (University of Wurzburg) for assisting with the TEM analysis, and Sebastian Fraune (University of Kiel) for reading the manuscript critically. We also thank several anonymous reviewers for constructive comments.

PY - 2016/2/29

Y1 - 2016/2/29

N2 - Background Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.

AB - Background Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR)-like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.

UR - http://hdl.handle.net/10754/600476

UR - http://www.biomedcentral.com/1471-2164/17/158

UR - http://www.scopus.com/inward/record.url?scp=84978763678&partnerID=8YFLogxK

U2 - 10.1186/s12864-016-2501-0

DO - 10.1186/s12864-016-2501-0

M3 - Article

C2 - 26926518

SN - 1471-2164

VL - 17

JO - BMC Genomics

JF - BMC Genomics

IS - 1

ER -

Hologenome analysis of two marine sponges with different microbiomes

Abstract

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Hologenome analysis of two marine sponges with different microbiomes

Abstract

Bibliographical note

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Supplementary Material for: Hologenome analysis of two marine sponges with different microbiomes

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