Genomic selection for spot blotch in bread wheat breeding panels, full-sibs and half-sibs and index-based selection for spot blotch, heading and plant height

Philomin Juliana, Xinyao He, Krishna K Roy, Paritosh K Malaker, Vinod K Mishra, Ramesh Chand, Sandesh Shrestha, Uttam Kumar, Chandan Roy, Navin C Gahtyari, Arun K Joshi, Ravi P Singh, Pawan K Singh

Research output: Contribution to journalArticlepeer-review

10 Scopus citations


A major biotic stress challenging bread wheat production in regions characterized by humid and warm weather is spot blotch caused by the fungus Bipolaris sorokiniana. Since genomic selection (GS) is a promising selection tool, we evaluated its potential for spot blotch in seven breeding panels comprising 6736 advanced lines from the International Maize and Wheat Improvement Center. Our results indicated moderately high mean genomic prediction accuracies of 0.53 and 0.40 within and across breeding panels, respectively which were on average 177.6% and 60.4% higher than the mean accuracies from fixed effects models using selected spot blotch loci. Genomic prediction was also evaluated in full-sibs and half-sibs panels and sibs were predicted with the highest mean accuracy (0.63) from a composite training population with random full-sibs and half-sibs. The mean accuracies when full-sibs were predicted from other full-sibs within families and when full-sibs panels were predicted from other half-sibs panels were 0.47 and 0.44, respectively. Comparison of GS with phenotypic selection (PS) of the top 10% of resistant lines suggested that GS could be an ideal tool to discard susceptible lines, as greater than 90% of the susceptible lines discarded by PS were also discarded by GS. We have also reported the evaluation of selection indices to simultaneously select non-late and non-tall genotypes with low spot blotch phenotypic values and genomic-estimated breeding values. Overall, this study demonstrates the potential of integrating GS and index-based selection for improving spot blotch resistance in bread wheat.
Original languageEnglish (US)
JournalTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik
StatePublished - Apr 13 2022
Externally publishedYes

Bibliographical note

KAUST Repository Item: Exported on 2022-04-15
Acknowledgements: Accelerating Genetic Gain (AGG) in Maize and Wheat Project Grant INV-003439 funded by the Bill and Melinda Gates Foundation (BMGF), the Foreign and Commonwealth Development Office (FCDO) and Foundation for Food and Agriculture Research (FFAR), Feed the Future project Grant #AID-OAA-A-13-00051 funded by the U.S. Agency for International Development (USAID), USAID-Crops to End Hunger (CtEH)-AGG Supplement grant, CGIAR Research Program on wheat and the Indian Council of Agricultural Research (ICAR) funds.

ASJC Scopus subject areas

  • Genetics
  • Agronomy and Crop Science
  • Biotechnology


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