Functional annotation of a full-length mouse cDNA collection

J. Kawai; A. Shinagawa; K. Shibata; M. Yoshino; M. Itoh; Y. Ishii; T. Arakawa; A. Hara; Y. Fukunishi; H. Konno; J. Adachi; S. Fukuda; K. Aizawa; M. Izawa; K. Nishi; H. Kiyosawa; S. Kondo; I. Yamanaka; T. Saito; Y. Okazaki; T. Gojobori; H. Bono; T. Kasukawa; R. Saito; K. Kadota; H. Matsuda; M. Ashburner; S. Batalov; T. Casavant; W. Fleischmann; T. Gaasterland; C. Gissi; B. King; H. Kochiwa; P. Kuehl; S. Lewis; Y. Matsuo; I. Nikaido; G. Pesole; J. Quackenbush; L. M. Schriml; F. Staubli; R. Suzuki; M. Tomita; L. Wagner; T. Washio; K. Sakai; T. Okido; M. Furuno; H. Aono; R. Baldarelli; G. Barsh; J. Blake; D. Boffelli; N. Bojunga; P. Carninci; M. F. De Bonaldo; M. J. Brownstein; C. Bult; C. Fletcher; M. Fujita; M. Gariboldi; S. Gustincich; D. Hill; M. Hofmann; D. A. Hume; M. Kamiya; N. H. Lee; P. Lyons; L. Marchionni; J. Mashima; J. Mazzarelli; P. Mombaerts; P. Nordone; B. Ring; M. Ringwald; I. Rodriguez; N. Sakamoto; H. Sasaki; K. Sato; C. Schönbach; T. Seya; Y. Shibata; K. F. Storch; H. Suzuki; K. Toyo-Oka; K. H. Wang; C. Weitz; C. Whittaker; L. Wilming; A. Wynshaw-Boris; K. Yoshida; Y. Hasegawa; H. Kawaji; S. Kohtsuki; Y. Hayashizaki

doi:10.1038/35055500

Functional annotation of a full-length mouse cDNA collection

J. Kawai, A. Shinagawa, K. Shibata, M. Yoshino, M. Itoh, Y. Ishii, T. Arakawa, A. Hara, Y. Fukunishi, H. Konno, J. Adachi, S. Fukuda, K. Aizawa, M. Izawa, K. Nishi, H. Kiyosawa, S. Kondo, I. Yamanaka, T. Saito, Y. OkazakiT. Gojobori, H. Bono, T. Kasukawa, R. Saito, K. Kadota, H. Matsuda, M. Ashburner, S. Batalov, T. Casavant, W. Fleischmann, T. Gaasterland, C. Gissi, B. King, H. Kochiwa, P. Kuehl, S. Lewis, Y. Matsuo, I. Nikaido, G. Pesole, J. Quackenbush, L. M. Schriml, F. Staubli, R. Suzuki, M. Tomita, L. Wagner, T. Washio, K. Sakai, T. Okido, M. Furuno, H. Aono, R. Baldarelli, G. Barsh, J. Blake, D. Boffelli, N. Bojunga, P. Carninci, M. F. De Bonaldo, M. J. Brownstein, C. Bult, C. Fletcher, M. Fujita, M. Gariboldi, S. Gustincich, D. Hill, M. Hofmann, D. A. Hume, M. Kamiya, N. H. Lee, P. Lyons, L. Marchionni, J. Mashima, J. Mazzarelli, P. Mombaerts, P. Nordone, B. Ring, M. Ringwald, I. Rodriguez, N. Sakamoto, H. Sasaki, K. Sato, C. Schönbach, T. Seya, Y. Shibata, K. F. Storch, H. Suzuki, K. Toyo-Oka, K. H. Wang, C. Weitz, C. Whittaker, L. Wilming, A. Wynshaw-Boris, K. Yoshida, Y. Hasegawa, H. Kawaji, S. Kohtsuki, Y. Hayashizaki

Research output: Contribution to journal › Article › peer-review

584 Scopus citations

Abstract

The RIKEN Mouse Gene Encyclopaedia Project, a systematic approach to determining the full coding potential of the mouse genome, involves collection and sequencing of full-length complementary DNAs and physical mapping of the corresponding genes to the mouse genome. We organized an international functional annotation meeting (FANTOM) to annotate the first 21,076 cDNAs to be analysed in this project. Here we describe the first RIKEN clone collection, which is one of the largest described for any organism. Analysis of these cDNAs extends known gene families and identifies new ones.

Original language	English (US)
Pages (from-to)	685-689
Number of pages	5
Journal	NATURE
Volume	409
Issue number	6821
DOIs	https://doi.org/10.1038/35055500
State	Published - Feb 8 2001
Externally published	Yes

Bibliographical note

Funding Information:
The authors would like to thank the Universiti Kebangsaan Malaysia for Research University grants DIP-2016-015 DPP-2015-IPI, and GGPM-2016-034. The authors also would like to thank A.K. Jalaluddin for providing the laboratory support during the analysis. The authors also like to express their gratitude to K. Alexander (UK), A. Robinson (University of Cambridge), and Rose Norman (UK) for their assistance in proofreading this article. The fire hotspots data were downloaded from the National Aeronautics and Space Administration Land Atmosphere Near real-time Capability for Earth Observing System Fire Information for Resource Management System fire archive (link: https://firms.modaps.eosdis.nasa.gov/download/). The data of the HYSPLIT model were available at ftp://arlftp.arlhq.noaa.gov/pub/archives/reanalysis. The aerosol, composition, reactive gas data, the codes used for GrADS and PSCF, the input files of the PMF 5.0 procedure, and the results of all the plots are available from Md Firoz Khan ([email protected] and [email protected]). In the future, we also plan to upload the data at our official website (http://www.ukm.my/ipi/?position=felo-penyelidik).

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10.1038/35055500

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Kawai, J., Shinagawa, A., Shibata, K., Yoshino, M., Itoh, M., Ishii, Y., Arakawa, T., Hara, A., Fukunishi, Y., Konno, H., Adachi, J., Fukuda, S., Aizawa, K., Izawa, M., Nishi, K., Kiyosawa, H., Kondo, S., Yamanaka, I., Saito, T., ... Hayashizaki, Y. (2001). Functional annotation of a full-length mouse cDNA collection. NATURE, 409(6821), 685-689. https://doi.org/10.1038/35055500

@article{624137d9e3fb4a3dbc1bb593bfbe8565,

title = "Functional annotation of a full-length mouse cDNA collection",

abstract = "The RIKEN Mouse Gene Encyclopaedia Project, a systematic approach to determining the full coding potential of the mouse genome, involves collection and sequencing of full-length complementary DNAs and physical mapping of the corresponding genes to the mouse genome. We organized an international functional annotation meeting (FANTOM) to annotate the first 21,076 cDNAs to be analysed in this project. Here we describe the first RIKEN clone collection, which is one of the largest described for any organism. Analysis of these cDNAs extends known gene families and identifies new ones.",

author = "J. Kawai and A. Shinagawa and K. Shibata and M. Yoshino and M. Itoh and Y. Ishii and T. Arakawa and A. Hara and Y. Fukunishi and H. Konno and J. Adachi and S. Fukuda and K. Aizawa and M. Izawa and K. Nishi and H. Kiyosawa and S. Kondo and I. Yamanaka and T. Saito and Y. Okazaki and T. Gojobori and H. Bono and T. Kasukawa and R. Saito and K. Kadota and H. Matsuda and M. Ashburner and S. Batalov and T. Casavant and W. Fleischmann and T. Gaasterland and C. Gissi and B. King and H. Kochiwa and P. Kuehl and S. Lewis and Y. Matsuo and I. Nikaido and G. Pesole and J. Quackenbush and Schriml, {L. M.} and F. Staubli and R. Suzuki and M. Tomita and L. Wagner and T. Washio and K. Sakai and T. Okido and M. Furuno and H. Aono and R. Baldarelli and G. Barsh and J. Blake and D. Boffelli and N. Bojunga and P. Carninci and {De Bonaldo}, {M. F.} and Brownstein, {M. J.} and C. Bult and C. Fletcher and M. Fujita and M. Gariboldi and S. Gustincich and D. Hill and M. Hofmann and Hume, {D. A.} and M. Kamiya and Lee, {N. H.} and P. Lyons and L. Marchionni and J. Mashima and J. Mazzarelli and P. Mombaerts and P. Nordone and B. Ring and M. Ringwald and I. Rodriguez and N. Sakamoto and H. Sasaki and K. Sato and C. Sch{\"o}nbach and T. Seya and Y. Shibata and Storch, {K. F.} and H. Suzuki and K. Toyo-Oka and Wang, {K. H.} and C. Weitz and C. Whittaker and L. Wilming and A. Wynshaw-Boris and K. Yoshida and Y. Hasegawa and H. Kawaji and S. Kohtsuki and Y. Hayashizaki",

note = "Funding Information: The authors would like to thank the Universiti Kebangsaan Malaysia for Research University grants DIP-2016-015 DPP-2015-IPI, and GGPM-2016-034. The authors also would like to thank A.K. Jalaluddin for providing the laboratory support during the analysis. The authors also like to express their gratitude to K. Alexander (UK), A. Robinson (University of Cambridge), and Rose Norman (UK) for their assistance in proofreading this article. The fire hotspots data were downloaded from the National Aeronautics and Space Administration Land Atmosphere Near real-time Capability for Earth Observing System Fire Information for Resource Management System fire archive (link: https://firms.modaps.eosdis.nasa.gov/download/). The data of the HYSPLIT model were available at ftp://arlftp.arlhq.noaa.gov/pub/archives/reanalysis. The aerosol, composition, reactive gas data, the codes used for GrADS and PSCF, the input files of the PMF 5.0 procedure, and the results of all the plots are available from Md Firoz Khan ([email protected] and [email protected]). In the future, we also plan to upload the data at our official website (http://www.ukm.my/ipi/?position=felo-penyelidik).",

year = "2001",

month = feb,

day = "8",

doi = "10.1038/35055500",

language = "English (US)",

volume = "409",

pages = "685--689",

journal = "NATURE",

issn = "0028-0836",

publisher = "Nature Publishing Group",

number = "6821",

}

Kawai, J, Shinagawa, A, Shibata, K, Yoshino, M, Itoh, M, Ishii, Y, Arakawa, T, Hara, A, Fukunishi, Y, Konno, H, Adachi, J, Fukuda, S, Aizawa, K, Izawa, M, Nishi, K, Kiyosawa, H, Kondo, S, Yamanaka, I, Saito, T, Okazaki, Y, Gojobori, T, Bono, H, Kasukawa, T, Saito, R, Kadota, K, Matsuda, H, Ashburner, M, Batalov, S, Casavant, T, Fleischmann, W, Gaasterland, T, Gissi, C, King, B, Kochiwa, H, Kuehl, P, Lewis, S, Matsuo, Y, Nikaido, I, Pesole, G, Quackenbush, J, Schriml, LM, Staubli, F, Suzuki, R, Tomita, M, Wagner, L, Washio, T, Sakai, K, Okido, T, Furuno, M, Aono, H, Baldarelli, R, Barsh, G, Blake, J, Boffelli, D, Bojunga, N, Carninci, P, De Bonaldo, MF, Brownstein, MJ, Bult, C, Fletcher, C, Fujita, M, Gariboldi, M, Gustincich, S, Hill, D, Hofmann, M, Hume, DA, Kamiya, M, Lee, NH, Lyons, P, Marchionni, L, Mashima, J, Mazzarelli, J, Mombaerts, P, Nordone, P, Ring, B, Ringwald, M, Rodriguez, I, Sakamoto, N, Sasaki, H, Sato, K, Schönbach, C, Seya, T, Shibata, Y, Storch, KF, Suzuki, H, Toyo-Oka, K, Wang, KH, Weitz, C, Whittaker, C, Wilming, L, Wynshaw-Boris, A, Yoshida, K, Hasegawa, Y, Kawaji, H, Kohtsuki, S & Hayashizaki, Y 2001, 'Functional annotation of a full-length mouse cDNA collection', NATURE, vol. 409, no. 6821, pp. 685-689. https://doi.org/10.1038/35055500

TY - JOUR

T1 - Functional annotation of a full-length mouse cDNA collection

AU - Kawai, J.

AU - Shinagawa, A.

AU - Shibata, K.

AU - Yoshino, M.

AU - Itoh, M.

AU - Ishii, Y.

AU - Arakawa, T.

AU - Hara, A.

AU - Fukunishi, Y.

AU - Konno, H.

AU - Adachi, J.

AU - Fukuda, S.

AU - Aizawa, K.

AU - Izawa, M.

AU - Nishi, K.

AU - Kiyosawa, H.

AU - Kondo, S.

AU - Yamanaka, I.

AU - Saito, T.

AU - Okazaki, Y.

AU - Gojobori, T.

AU - Bono, H.

AU - Kasukawa, T.

AU - Saito, R.

AU - Kadota, K.

AU - Matsuda, H.

AU - Ashburner, M.

AU - Batalov, S.

AU - Casavant, T.

AU - Fleischmann, W.

AU - Gaasterland, T.

AU - Gissi, C.

AU - King, B.

AU - Kochiwa, H.

AU - Kuehl, P.

AU - Lewis, S.

AU - Matsuo, Y.

AU - Nikaido, I.

AU - Pesole, G.

AU - Quackenbush, J.

AU - Schriml, L. M.

AU - Staubli, F.

AU - Suzuki, R.

AU - Tomita, M.

AU - Wagner, L.

AU - Washio, T.

AU - Sakai, K.

AU - Okido, T.

AU - Furuno, M.

AU - Aono, H.

AU - Baldarelli, R.

AU - Barsh, G.

AU - Blake, J.

AU - Boffelli, D.

AU - Bojunga, N.

AU - Carninci, P.

AU - De Bonaldo, M. F.

AU - Brownstein, M. J.

AU - Bult, C.

AU - Fletcher, C.

AU - Fujita, M.

AU - Gariboldi, M.

AU - Gustincich, S.

AU - Hill, D.

AU - Hofmann, M.

AU - Hume, D. A.

AU - Kamiya, M.

AU - Lee, N. H.

AU - Lyons, P.

AU - Marchionni, L.

AU - Mashima, J.

AU - Mazzarelli, J.

AU - Mombaerts, P.

AU - Nordone, P.

AU - Ring, B.

AU - Ringwald, M.

AU - Rodriguez, I.

AU - Sakamoto, N.

AU - Sasaki, H.

AU - Sato, K.

AU - Schönbach, C.

AU - Seya, T.

AU - Shibata, Y.

AU - Storch, K. F.

AU - Suzuki, H.

AU - Toyo-Oka, K.

AU - Wang, K. H.

AU - Weitz, C.

AU - Whittaker, C.

AU - Wilming, L.

AU - Wynshaw-Boris, A.

AU - Yoshida, K.

AU - Hasegawa, Y.

AU - Kawaji, H.

AU - Kohtsuki, S.

AU - Hayashizaki, Y.

N1 - Funding Information: The authors would like to thank the Universiti Kebangsaan Malaysia for Research University grants DIP-2016-015 DPP-2015-IPI, and GGPM-2016-034. The authors also would like to thank A.K. Jalaluddin for providing the laboratory support during the analysis. The authors also like to express their gratitude to K. Alexander (UK), A. Robinson (University of Cambridge), and Rose Norman (UK) for their assistance in proofreading this article. The fire hotspots data were downloaded from the National Aeronautics and Space Administration Land Atmosphere Near real-time Capability for Earth Observing System Fire Information for Resource Management System fire archive (link: https://firms.modaps.eosdis.nasa.gov/download/). The data of the HYSPLIT model were available at ftp://arlftp.arlhq.noaa.gov/pub/archives/reanalysis. The aerosol, composition, reactive gas data, the codes used for GrADS and PSCF, the input files of the PMF 5.0 procedure, and the results of all the plots are available from Md Firoz Khan ([email protected] and [email protected]). In the future, we also plan to upload the data at our official website (http://www.ukm.my/ipi/?position=felo-penyelidik).

PY - 2001/2/8

Y1 - 2001/2/8

N2 - The RIKEN Mouse Gene Encyclopaedia Project, a systematic approach to determining the full coding potential of the mouse genome, involves collection and sequencing of full-length complementary DNAs and physical mapping of the corresponding genes to the mouse genome. We organized an international functional annotation meeting (FANTOM) to annotate the first 21,076 cDNAs to be analysed in this project. Here we describe the first RIKEN clone collection, which is one of the largest described for any organism. Analysis of these cDNAs extends known gene families and identifies new ones.

AB - The RIKEN Mouse Gene Encyclopaedia Project, a systematic approach to determining the full coding potential of the mouse genome, involves collection and sequencing of full-length complementary DNAs and physical mapping of the corresponding genes to the mouse genome. We organized an international functional annotation meeting (FANTOM) to annotate the first 21,076 cDNAs to be analysed in this project. Here we describe the first RIKEN clone collection, which is one of the largest described for any organism. Analysis of these cDNAs extends known gene families and identifies new ones.

UR - http://www.scopus.com/inward/record.url?scp=0035825662&partnerID=8YFLogxK

U2 - 10.1038/35055500

DO - 10.1038/35055500

M3 - Article

C2 - 11217851

AN - SCOPUS:0035825662

SN - 0028-0836

VL - 409

SP - 685

EP - 689

JO - NATURE

JF - NATURE

IS - 6821

ER -

Functional annotation of a full-length mouse cDNA collection

Abstract

Bibliographical note

ASJC Scopus subject areas

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