De novo next generation sequencing of plant genomes

Steve Rounsley; Pradeep Reddy Marri; Yeisoo Yu; Ruifeng He; Nick Sisneros; Jose Luis Goicoechea; So Jeong Lee; Angelina Angelova; Dave Kudrna; Meizhong Luo; Jason Affourtit; Brian Desany; James Knight; Faheem Niazi; Michael Egholm; Rod A. Wing

doi:10.1007/s12284-009-9025-z

De novo next generation sequencing of plant genomes

Steve Rounsley, Pradeep Reddy Marri, Yeisoo Yu, Ruifeng He, Nick Sisneros, Jose Luis Goicoechea, So Jeong Lee, Angelina Angelova, Dave Kudrna, Meizhong Luo, Jason Affourtit, Brian Desany, James Knight, Faheem Niazi, Michael Egholm, Rod A. Wing

Research output: Contribution to journal › Article › peer-review

54 Scopus citations

Abstract

The genome sequencing of all major food and bioenergy crops is of critical importance in the race to improve crop production to meet the future food and energy security needs of the world. Next generation sequencing technologies have brought about great improvements in sequencing throughput and cost, but do not yet allow for de novo sequencing of large repetitive genomes as found in most crop plants.We present a strategy that combines cutting edge next generation sequencing with "old school" genomics resources and allows rapid cost-effective sequencing of plant genomes. © Springer Science + Business Media, LLC 2009.

Original language	English (US)
Journal	Rice
Volume	2
Issue number	1
DOIs	https://doi.org/10.1007/s12284-009-9025-z
State	Published - Mar 1 2009
Externally published	Yes

Bibliographical note

Generated from Scopus record by KAUST IRTS on 2019-11-20

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10.1007/s12284-009-9025-z

Cite this

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abstract = "The genome sequencing of all major food and bioenergy crops is of critical importance in the race to improve crop production to meet the future food and energy security needs of the world. Next generation sequencing technologies have brought about great improvements in sequencing throughput and cost, but do not yet allow for de novo sequencing of large repetitive genomes as found in most crop plants.We present a strategy that combines cutting edge next generation sequencing with {"}old school{"} genomics resources and allows rapid cost-effective sequencing of plant genomes. {\textcopyright} Springer Science + Business Media, LLC 2009.",

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doi = "10.1007/s12284-009-9025-z",

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T1 - De novo next generation sequencing of plant genomes

AU - Rounsley, Steve

AU - Marri, Pradeep Reddy

AU - Yu, Yeisoo

AU - He, Ruifeng

AU - Sisneros, Nick

AU - Goicoechea, Jose Luis

AU - Lee, So Jeong

AU - Angelova, Angelina

AU - Kudrna, Dave

AU - Luo, Meizhong

AU - Affourtit, Jason

AU - Desany, Brian

AU - Knight, James

AU - Niazi, Faheem

AU - Egholm, Michael

AU - Wing, Rod A.

N1 - Generated from Scopus record by KAUST IRTS on 2019-11-20

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N2 - The genome sequencing of all major food and bioenergy crops is of critical importance in the race to improve crop production to meet the future food and energy security needs of the world. Next generation sequencing technologies have brought about great improvements in sequencing throughput and cost, but do not yet allow for de novo sequencing of large repetitive genomes as found in most crop plants.We present a strategy that combines cutting edge next generation sequencing with "old school" genomics resources and allows rapid cost-effective sequencing of plant genomes. © Springer Science + Business Media, LLC 2009.

AB - The genome sequencing of all major food and bioenergy crops is of critical importance in the race to improve crop production to meet the future food and energy security needs of the world. Next generation sequencing technologies have brought about great improvements in sequencing throughput and cost, but do not yet allow for de novo sequencing of large repetitive genomes as found in most crop plants.We present a strategy that combines cutting edge next generation sequencing with "old school" genomics resources and allows rapid cost-effective sequencing of plant genomes. © Springer Science + Business Media, LLC 2009.

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JO - Rice

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De novo next generation sequencing of plant genomes

Abstract

Bibliographical note

UN SDGs

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