DDBJ dealing with mass data produced by the second generation sequencer

Hideaki Sugawara; Kazuho Ikeo; Satoshi Fukuchi; Takashi Gojobori; Yoshio Tateno

doi:10.1093/nar/gkn724

DDBJ dealing with mass data produced by the second generation sequencer

Hideaki Sugawara, Kazuho Ikeo, Satoshi Fukuchi, Takashi Gojobori, Yoshio Tateno^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

13 Scopus citations

Abstract

DNA Data Bank of Japan (DDBJ)(http://www.ddbj.nig.ac.jp) collected and released 2 368 110 entries or 1 415 106 598 bases in the period from July 2007 to June 2008. The releases in this period include genome scale data of Bombyx mori, Oryzas latipes, Drosophila and Lotus japonicus. In addition, from this year we collected and released trace archive data in collaboration with National Center for Biotechnology Information (NCBI). The first release contains those of O. latipes and bacterial meta genomes in human gut. To cope with the current progress of sequencing technology, we also accepted and released more than 100 million of short reads of parasitic protozoa and their hosts that were produced by using a Solexa sequencer.

Original language	English (US)
Pages (from-to)	D16-D18
Journal	Nucleic acids research
Volume	37
Issue number	SUPPL. 1
DOIs	https://doi.org/10.1093/nar/gkn724
State	Published - 2009
Externally published	Yes

Bibliographical note

Funding Information:
DDBJ is funded by the Ministry of Education, Culture, Sports, Science and Technology (MEXT) with the management expenses grant for national university cooperation. DDBJ is also supported by a grant from National Project of Integrating Life Science Databases. Funding to pay the open access publication charges for this article was provided by the Japan Society for the Promotion of Science.

ASJC Scopus subject areas

Genetics

Access to Document

10.1093/nar/gkn724

Cite this

@article{d92204d43eb84090a1456ee42a67b365,

title = "DDBJ dealing with mass data produced by the second generation sequencer",

abstract = "DNA Data Bank of Japan (DDBJ)(http://www.ddbj.nig.ac.jp) collected and released 2 368 110 entries or 1 415 106 598 bases in the period from July 2007 to June 2008. The releases in this period include genome scale data of Bombyx mori, Oryzas latipes, Drosophila and Lotus japonicus. In addition, from this year we collected and released trace archive data in collaboration with National Center for Biotechnology Information (NCBI). The first release contains those of O. latipes and bacterial meta genomes in human gut. To cope with the current progress of sequencing technology, we also accepted and released more than 100 million of short reads of parasitic protozoa and their hosts that were produced by using a Solexa sequencer.",

author = "Hideaki Sugawara and Kazuho Ikeo and Satoshi Fukuchi and Takashi Gojobori and Yoshio Tateno",

note = "Funding Information: DDBJ is funded by the Ministry of Education, Culture, Sports, Science and Technology (MEXT) with the management expenses grant for national university cooperation. DDBJ is also supported by a grant from National Project of Integrating Life Science Databases. Funding to pay the open access publication charges for this article was provided by the Japan Society for the Promotion of Science.",

year = "2009",

doi = "10.1093/nar/gkn724",

language = "English (US)",

volume = "37",

pages = "D16--D18",

journal = "Nucleic acids research",

issn = "0305-1048",

publisher = "OXFORD UNIV PRESS",

number = "SUPPL. 1",

}

TY - JOUR

T1 - DDBJ dealing with mass data produced by the second generation sequencer

AU - Sugawara, Hideaki

AU - Ikeo, Kazuho

AU - Fukuchi, Satoshi

AU - Gojobori, Takashi

AU - Tateno, Yoshio

N1 - Funding Information: DDBJ is funded by the Ministry of Education, Culture, Sports, Science and Technology (MEXT) with the management expenses grant for national university cooperation. DDBJ is also supported by a grant from National Project of Integrating Life Science Databases. Funding to pay the open access publication charges for this article was provided by the Japan Society for the Promotion of Science.

PY - 2009

Y1 - 2009

N2 - DNA Data Bank of Japan (DDBJ)(http://www.ddbj.nig.ac.jp) collected and released 2 368 110 entries or 1 415 106 598 bases in the period from July 2007 to June 2008. The releases in this period include genome scale data of Bombyx mori, Oryzas latipes, Drosophila and Lotus japonicus. In addition, from this year we collected and released trace archive data in collaboration with National Center for Biotechnology Information (NCBI). The first release contains those of O. latipes and bacterial meta genomes in human gut. To cope with the current progress of sequencing technology, we also accepted and released more than 100 million of short reads of parasitic protozoa and their hosts that were produced by using a Solexa sequencer.

AB - DNA Data Bank of Japan (DDBJ)(http://www.ddbj.nig.ac.jp) collected and released 2 368 110 entries or 1 415 106 598 bases in the period from July 2007 to June 2008. The releases in this period include genome scale data of Bombyx mori, Oryzas latipes, Drosophila and Lotus japonicus. In addition, from this year we collected and released trace archive data in collaboration with National Center for Biotechnology Information (NCBI). The first release contains those of O. latipes and bacterial meta genomes in human gut. To cope with the current progress of sequencing technology, we also accepted and released more than 100 million of short reads of parasitic protozoa and their hosts that were produced by using a Solexa sequencer.

UR - http://www.scopus.com/inward/record.url?scp=58149202177&partnerID=8YFLogxK

U2 - 10.1093/nar/gkn724

DO - 10.1093/nar/gkn724

M3 - Article

C2 - 18927114

AN - SCOPUS:58149202177

SN - 0305-1048

VL - 37

SP - D16-D18

JO - Nucleic acids research

JF - Nucleic acids research

IS - SUPPL. 1

ER -

DDBJ dealing with mass data produced by the second generation sequencer

Abstract

Bibliographical note

ASJC Scopus subject areas

Access to Document

Other files and links

Fingerprint

Cite this