Current trends in RNA virus detection through metatranscriptome sequencing data.

So Nakagawa; Shoichi Sakaguchi; Atsushi Ogura; Katsuhiko Mineta; Toshinori Endo; Yoshiyuki Suzuki; Takashi Gojobori

doi:10.1002/2211-5463.13626

Current trends in RNA virus detection through metatranscriptome sequencing data.

So Nakagawa, Shoichi Sakaguchi, Atsushi Ogura, Katsuhiko Mineta, Toshinori Endo, Yoshiyuki Suzuki, Takashi Gojobori

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Abstract

With advances in sequencing technology, metatranscriptome sequencing from a variety of environmental and biological sources has revealed the existence of various previously unknown RNA viruses. This review presents recent major RNA virome studies sampled from invertebrate and vertebrate species as well as aquatic environments. In particular, we focus on severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) and related RNA virus identification through metatranscriptome sequencing analyses. Recently developed bioinformatics software and databases for RNA virus identification are introduced. A relationship between newly identified RNA viruses and endogenous viral elements in host genomes is also discussed.

Original language	English (US)
Journal	FEBS Open Bio
DOIs	https://doi.org/10.1002/2211-5463.13626
State	Published - May 10 2023

Bibliographical note

KAUST Repository Item: Exported on 2023-05-19
Acknowledgements: This work was supported by JSPS KAKENHI Grant-in-Aid for Scientific Research (C) 20K06775 (to S.N. and S.S.); Early-Career Scientists 20K15685 and 22K14999 (to S.S.); and Scientific Research on Innovative Areas 16H06429 (to S.N.), 16K21723 (to S.N.), 17H05823 (to S.N.), 19H04843 (to S.N.); by JST CREST (JPMJCR20H6, to S.N.); and by AMED under grant numbers JP21wm0325004 (to S.N.) and 22wm0325004 (to S.N.)

ASJC Scopus subject areas

General Biochemistry, Genetics and Molecular Biology

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10.1002/2211-5463.13626

https://repository.kaust.edu.sa/bitstream/10754/691784/1/FEBS%20Open%20Bio%20-%202023%20-%20Nakagawa%20-%20Current%20trends%20in%20RNA%20virus%20detection%20through%20metatranscriptome%20sequencing%20data.pdf

Cite this

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title = "Current trends in RNA virus detection through metatranscriptome sequencing data.",

abstract = "With advances in sequencing technology, metatranscriptome sequencing from a variety of environmental and biological sources has revealed the existence of various previously unknown RNA viruses. This review presents recent major RNA virome studies sampled from invertebrate and vertebrate species as well as aquatic environments. In particular, we focus on severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) and related RNA virus identification through metatranscriptome sequencing analyses. Recently developed bioinformatics software and databases for RNA virus identification are introduced. A relationship between newly identified RNA viruses and endogenous viral elements in host genomes is also discussed.",

author = "So Nakagawa and Shoichi Sakaguchi and Atsushi Ogura and Katsuhiko Mineta and Toshinori Endo and Yoshiyuki Suzuki and Takashi Gojobori",

note = "KAUST Repository Item: Exported on 2023-05-19 Acknowledgements: This work was supported by JSPS KAKENHI Grant-in-Aid for Scientific Research (C) 20K06775 (to S.N. and S.S.); Early-Career Scientists 20K15685 and 22K14999 (to S.S.); and Scientific Research on Innovative Areas 16H06429 (to S.N.), 16K21723 (to S.N.), 17H05823 (to S.N.), 19H04843 (to S.N.); by JST CREST (JPMJCR20H6, to S.N.); and by AMED under grant numbers JP21wm0325004 (to S.N.) and 22wm0325004 (to S.N.)",

year = "2023",

month = may,

day = "10",

doi = "10.1002/2211-5463.13626",

language = "English (US)",

journal = "FEBS Open Bio",

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T1 - Current trends in RNA virus detection through metatranscriptome sequencing data.

AU - Nakagawa, So

AU - Sakaguchi, Shoichi

AU - Ogura, Atsushi

AU - Mineta, Katsuhiko

AU - Endo, Toshinori

AU - Suzuki, Yoshiyuki

AU - Gojobori, Takashi

N1 - KAUST Repository Item: Exported on 2023-05-19 Acknowledgements: This work was supported by JSPS KAKENHI Grant-in-Aid for Scientific Research (C) 20K06775 (to S.N. and S.S.); Early-Career Scientists 20K15685 and 22K14999 (to S.S.); and Scientific Research on Innovative Areas 16H06429 (to S.N.), 16K21723 (to S.N.), 17H05823 (to S.N.), 19H04843 (to S.N.); by JST CREST (JPMJCR20H6, to S.N.); and by AMED under grant numbers JP21wm0325004 (to S.N.) and 22wm0325004 (to S.N.)

PY - 2023/5/10

Y1 - 2023/5/10

N2 - With advances in sequencing technology, metatranscriptome sequencing from a variety of environmental and biological sources has revealed the existence of various previously unknown RNA viruses. This review presents recent major RNA virome studies sampled from invertebrate and vertebrate species as well as aquatic environments. In particular, we focus on severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) and related RNA virus identification through metatranscriptome sequencing analyses. Recently developed bioinformatics software and databases for RNA virus identification are introduced. A relationship between newly identified RNA viruses and endogenous viral elements in host genomes is also discussed.

AB - With advances in sequencing technology, metatranscriptome sequencing from a variety of environmental and biological sources has revealed the existence of various previously unknown RNA viruses. This review presents recent major RNA virome studies sampled from invertebrate and vertebrate species as well as aquatic environments. In particular, we focus on severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) and related RNA virus identification through metatranscriptome sequencing analyses. Recently developed bioinformatics software and databases for RNA virus identification are introduced. A relationship between newly identified RNA viruses and endogenous viral elements in host genomes is also discussed.

UR - http://hdl.handle.net/10754/691784

UR - https://febs.onlinelibrary.wiley.com/doi/10.1002/2211-5463.13626

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DO - 10.1002/2211-5463.13626

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SN - 2211-5463

JO - FEBS Open Bio

JF - FEBS Open Bio

ER -

Current trends in RNA virus detection through metatranscriptome sequencing data.

Abstract

Bibliographical note

ASJC Scopus subject areas

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