Codon usage tabulated from the international DNA sequence databases; its status 1999

Yasukazu Nakamura; Takashi Gojobori; Toshimichi Ikemura

doi:10.1093/nar/27.1.292

Codon usage tabulated from the international DNA sequence databases; its status 1999

Yasukazu Nakamura^*, Takashi Gojobori, Toshimichi Ikemura

^*Corresponding author for this work

Research output: Contribution to journal › Short survey › peer-review

171 Scopus citations

Abstract

Frequencies for each of the 206,526 complete protein-coding genes (CDS's) have been compiled from taxonomical divisions of the GenBank DNA sequence database. The sum of the codon use of 7434 organisms has also been calculated. These data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of the codon usage of genes in an organism as well as the sum of the codon usage of the organism was made searchable by the name of organism through a web site http://www.dna.affrc.go.jp/~nakamura/CUTG.html.

Original language	English (US)
Pages (from-to)	292
Number of pages	1
Journal	NUCLEIC ACIDS RESEARCH
Volume	27
Issue number	1
DOIs	https://doi.org/10.1093/nar/27.1.292
State	Published - Jan 1 1999
Externally published	Yes

Bibliographical note

Funding Information:
We wish to thank Dr Y. Ugawa at the DNA Information and Stock Center, National Institute of Agrobiological Resources for his help in constructing and distributing the database. This work was supported in part by a grant-in-aid for databases from the Ministry of Education, Science, Sports and Culture of Japan. Y.N. is supported by the Kazusa DNA Research Institute Foundation.

ASJC Scopus subject areas

Genetics

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10.1093/nar/27.1.292

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abstract = "Frequencies for each of the 206,526 complete protein-coding genes (CDS's) have been compiled from taxonomical divisions of the GenBank DNA sequence database. The sum of the codon use of 7434 organisms has also been calculated. These data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of the codon usage of genes in an organism as well as the sum of the codon usage of the organism was made searchable by the name of organism through a web site http://www.dna.affrc.go.jp/~nakamura/CUTG.html.",

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AU - Gojobori, Takashi

AU - Ikemura, Toshimichi

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N2 - Frequencies for each of the 206,526 complete protein-coding genes (CDS's) have been compiled from taxonomical divisions of the GenBank DNA sequence database. The sum of the codon use of 7434 organisms has also been calculated. These data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of the codon usage of genes in an organism as well as the sum of the codon usage of the organism was made searchable by the name of organism through a web site http://www.dna.affrc.go.jp/~nakamura/CUTG.html.

AB - Frequencies for each of the 206,526 complete protein-coding genes (CDS's) have been compiled from taxonomical divisions of the GenBank DNA sequence database. The sum of the codon use of 7434 organisms has also been calculated. These data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of the codon usage of genes in an organism as well as the sum of the codon usage of the organism was made searchable by the name of organism through a web site http://www.dna.affrc.go.jp/~nakamura/CUTG.html.

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Codon usage tabulated from the international DNA sequence databases; its status 1999

Abstract

Bibliographical note

ASJC Scopus subject areas

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