A draft sequence of the rice genome (Oryza sativa L. ssp. indica)

J. Yu; S. Hu; J. Wang; G. K.S. Wong; S. Li; B. Liu; Y. Deng; L. Dai; Y. Zhou; X. Zhang; M. Cao; J. Liu; J. Sun; J. Tang; Y. Chen; X. Huang; W. Lin; C. Ye; W. Tong; L. Cong; J. Geng; Y. Han; L. Li; W. Li; G. Hu; J. Li; Z. Liu; Q. Qi; T. Li; X. Wang; H. Lu; T. Wu; M. Zhu; P. Ni; H. Han; W. Dong; X. Ren; X. Feng; P. Cui; X. Li; H. Wang; X. Xu; W. Zhai; Z. Xu; J. Zhang; S. He; J. Xu; K. Zhang; X. Zheng; J. Dong; W. Zeng; L. Tao; J. Ye; J. Tan; X. Chen; J. He; D. Liu; W. Tian; C. Tian; H. Xia; Q. Bao; G. Li; H. Gao; T. Cao; W. Zhao; P. Li; W. Chen; Y. Zhang; J. Hu; S. Liu; J. Yang; G. Zhang; Y. Xiong; Z. Li; L. Mao; C. Zhou; Z. Zhu; R. Chen; B. Hao; W. Zheng; S. Chen; W. Guo; M. Tao; L. Zhu; L. Yuan; H. Yang

doi:10.1126/science.1068037

A draft sequence of the rice genome (Oryza sativa L. ssp. indica)

J. Yu, S. Hu, J. Wang, G. K.S. Wong, S. Li, B. Liu, Y. Deng, L. Dai, Y. Zhou, X. Zhang, M. Cao, J. Liu, J. Sun, J. Tang, Y. Chen, X. Huang, W. Lin, C. Ye, W. Tong, L. CongJ. Geng, Y. Han, L. Li, W. Li, G. Hu, J. Li, Z. Liu, Q. Qi, T. Li, X. Wang, H. Lu, T. Wu, M. Zhu, P. Ni, H. Han, W. Dong, X. Ren, X. Feng, P. Cui, X. Li, H. Wang, X. Xu, W. Zhai, Z. Xu, J. Zhang, S. He, J. Xu, K. Zhang, X. Zheng, J. Dong, W. Zeng, L. Tao, J. Ye, J. Tan, X. Chen, J. He, D. Liu, W. Tian, C. Tian, H. Xia, Q. Bao, G. Li, H. Gao, T. Cao, W. Zhao, P. Li, W. Chen, Y. Zhang, J. Hu, S. Liu, J. Yang, G. Zhang, Y. Xiong, Z. Li, L. Mao, C. Zhou, Z. Zhu, R. Chen, B. Hao, W. Zheng, S. Chen, W. Guo, M. Tao, L. Zhu, L. Yuan, H. Yang^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

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Abstract

We have produced a draft sequence of the rice genome for the most widely cultivated subspecies in China, Oryza sativa L. ssp. indica, by whole-genome shotgun sequencing. The genome was 466 megabases in size, with an estimated 46,022 to 55,615 genes. Functional coverage in the assembled sequences was 92.0%. About 42.2% of the genome was in exact 20-nucleotide oligomer repeats, and most of the transposons were in the intergenic regions between genes. Although 80.6% of predicted Arabidopsis thaliana genes had a homolog in rice, only 49.4% of predicted rice genes had a homolog in A. thaliana. The large proportion of rice genes with no recognizable homologs is due to a gradient in the GC content of rice coding sequences.

Original language	English (US)
Pages (from-to)	79-92
Number of pages	14
Journal	SCIENCE
Volume	296
Issue number	5565
DOIs	https://doi.org/10.1126/science.1068037
State	Published - Apr 5 2002
Externally published	Yes

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@article{eb6bc65036534bd2b909bfb56da5cb4d,

title = "A draft sequence of the rice genome (Oryza sativa L. ssp. indica)",

abstract = "We have produced a draft sequence of the rice genome for the most widely cultivated subspecies in China, Oryza sativa L. ssp. indica, by whole-genome shotgun sequencing. The genome was 466 megabases in size, with an estimated 46,022 to 55,615 genes. Functional coverage in the assembled sequences was 92.0%. About 42.2% of the genome was in exact 20-nucleotide oligomer repeats, and most of the transposons were in the intergenic regions between genes. Although 80.6% of predicted Arabidopsis thaliana genes had a homolog in rice, only 49.4% of predicted rice genes had a homolog in A. thaliana. The large proportion of rice genes with no recognizable homologs is due to a gradient in the GC content of rice coding sequences.",

author = "J. Yu and S. Hu and J. Wang and Wong, {G. K.S.} and S. Li and B. Liu and Y. Deng and L. Dai and Y. Zhou and X. Zhang and M. Cao and J. Liu and J. Sun and J. Tang and Y. Chen and X. Huang and W. Lin and C. Ye and W. Tong and L. Cong and J. Geng and Y. Han and L. Li and W. Li and G. Hu and J. Li and Z. Liu and Q. Qi and T. Li and X. Wang and H. Lu and T. Wu and M. Zhu and P. Ni and H. Han and W. Dong and X. Ren and X. Feng and P. Cui and X. Li and H. Wang and X. Xu and W. Zhai and Z. Xu and J. Zhang and S. He and J. Xu and K. Zhang and X. Zheng and J. Dong and W. Zeng and L. Tao and J. Ye and J. Tan and X. Chen and J. He and D. Liu and W. Tian and C. Tian and H. Xia and Q. Bao and G. Li and H. Gao and T. Cao and W. Zhao and P. Li and W. Chen and Y. Zhang and J. Hu and S. Liu and J. Yang and G. Zhang and Y. Xiong and Z. Li and L. Mao and C. Zhou and Z. Zhu and R. Chen and B. Hao and W. Zheng and S. Chen and W. Guo and M. Tao and L. Zhu and L. Yuan and H. Yang",

year = "2002",

month = apr,

day = "5",

doi = "10.1126/science.1068037",

language = "English (US)",

volume = "296",

pages = "79--92",

journal = "SCIENCE",

issn = "0036-8075",

publisher = "American Association for the Advancement of Science",

number = "5565",

}

Yu, J, Hu, S, Wang, J, Wong, GKS, Li, S, Liu, B, Deng, Y, Dai, L, Zhou, Y, Zhang, X, Cao, M, Liu, J, Sun, J, Tang, J, Chen, Y, Huang, X, Lin, W, Ye, C, Tong, W, Cong, L, Geng, J, Han, Y, Li, L, Li, W, Hu, G, Li, J, Liu, Z, Qi, Q, Li, T, Wang, X, Lu, H, Wu, T, Zhu, M, Ni, P, Han, H, Dong, W, Ren, X, Feng, X, Cui, P, Li, X, Wang, H, Xu, X, Zhai, W, Xu, Z, Zhang, J, He, S, Xu, J, Zhang, K, Zheng, X, Dong, J, Zeng, W, Tao, L, Ye, J, Tan, J, Chen, X, He, J, Liu, D, Tian, W, Tian, C, Xia, H, Bao, Q, Li, G, Gao, H, Cao, T, Zhao, W, Li, P, Chen, W, Zhang, Y, Hu, J, Liu, S, Yang, J, Zhang, G, Xiong, Y, Li, Z, Mao, L, Zhou, C, Zhu, Z, Chen, R, Hao, B, Zheng, W, Chen, S, Guo, W, Tao, M, Zhu, L, Yuan, L & Yang, H 2002, 'A draft sequence of the rice genome (Oryza sativa L. ssp. indica)', SCIENCE, vol. 296, no. 5565, pp. 79-92. https://doi.org/10.1126/science.1068037

TY - JOUR

T1 - A draft sequence of the rice genome (Oryza sativa L. ssp. indica)

AU - Yu, J.

AU - Hu, S.

AU - Wang, J.

AU - Wong, G. K.S.

AU - Li, S.

AU - Liu, B.

AU - Deng, Y.

AU - Dai, L.

AU - Zhou, Y.

AU - Zhang, X.

AU - Cao, M.

AU - Liu, J.

AU - Sun, J.

AU - Tang, J.

AU - Chen, Y.

AU - Huang, X.

AU - Lin, W.

AU - Ye, C.

AU - Tong, W.

AU - Cong, L.

AU - Geng, J.

AU - Han, Y.

AU - Li, L.

AU - Li, W.

AU - Hu, G.

AU - Li, J.

AU - Liu, Z.

AU - Qi, Q.

AU - Li, T.

AU - Wang, X.

AU - Lu, H.

AU - Wu, T.

AU - Zhu, M.

AU - Ni, P.

AU - Han, H.

AU - Dong, W.

AU - Ren, X.

AU - Feng, X.

AU - Cui, P.

AU - Li, X.

AU - Wang, H.

AU - Xu, X.

AU - Zhai, W.

AU - Xu, Z.

AU - Zhang, J.

AU - He, S.

AU - Xu, J.

AU - Zhang, K.

AU - Zheng, X.

AU - Dong, J.

AU - Zeng, W.

AU - Tao, L.

AU - Ye, J.

AU - Tan, J.

AU - Chen, X.

AU - He, J.

AU - Liu, D.

AU - Tian, W.

AU - Tian, C.

AU - Xia, H.

AU - Bao, Q.

AU - Li, G.

AU - Gao, H.

AU - Cao, T.

AU - Zhao, W.

AU - Li, P.

AU - Chen, W.

AU - Zhang, Y.

AU - Hu, J.

AU - Liu, S.

AU - Yang, J.

AU - Zhang, G.

AU - Xiong, Y.

AU - Li, Z.

AU - Mao, L.

AU - Zhou, C.

AU - Zhu, Z.

AU - Chen, R.

AU - Hao, B.

AU - Zheng, W.

AU - Chen, S.

AU - Guo, W.

AU - Tao, M.

AU - Zhu, L.

AU - Yuan, L.

AU - Yang, H.

PY - 2002/4/5

Y1 - 2002/4/5

N2 - We have produced a draft sequence of the rice genome for the most widely cultivated subspecies in China, Oryza sativa L. ssp. indica, by whole-genome shotgun sequencing. The genome was 466 megabases in size, with an estimated 46,022 to 55,615 genes. Functional coverage in the assembled sequences was 92.0%. About 42.2% of the genome was in exact 20-nucleotide oligomer repeats, and most of the transposons were in the intergenic regions between genes. Although 80.6% of predicted Arabidopsis thaliana genes had a homolog in rice, only 49.4% of predicted rice genes had a homolog in A. thaliana. The large proportion of rice genes with no recognizable homologs is due to a gradient in the GC content of rice coding sequences.

AB - We have produced a draft sequence of the rice genome for the most widely cultivated subspecies in China, Oryza sativa L. ssp. indica, by whole-genome shotgun sequencing. The genome was 466 megabases in size, with an estimated 46,022 to 55,615 genes. Functional coverage in the assembled sequences was 92.0%. About 42.2% of the genome was in exact 20-nucleotide oligomer repeats, and most of the transposons were in the intergenic regions between genes. Although 80.6% of predicted Arabidopsis thaliana genes had a homolog in rice, only 49.4% of predicted rice genes had a homolog in A. thaliana. The large proportion of rice genes with no recognizable homologs is due to a gradient in the GC content of rice coding sequences.

UR - http://www.scopus.com/inward/record.url?scp=0037023384&partnerID=8YFLogxK

U2 - 10.1126/science.1068037

DO - 10.1126/science.1068037

M3 - Article

C2 - 11935017

AN - SCOPUS:0037023384

SN - 0036-8075

VL - 296

SP - 79

EP - 92

JO - SCIENCE

JF - SCIENCE

IS - 5565

ER -

A draft sequence of the rice genome (Oryza sativa L. ssp. indica)

Abstract

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