Research output per year
Research output per year
Personal profile
Research Overview
My main research interests are biomedical text/data mining and data integration. I develop methods for analyzing large and heterogeneous data for finding solutions to various problems in the domain of biomedicine.
Key Research Areas
Text/Data Mining, Data Integration, Information Extraction, Named Entity Recognition, Text Classification, Bioinformatics.
Education
Computer Engineering, Ph.D. , Eastern Mediterranean University
2012
Computer Engineering, M.S., Eastern Mediterranean University
2005
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Dive into the research topics where Senay Kafkas is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Exploring the Use of Ontology Components for Distantly-Supervised Disease and Phenotype Named Entity Recognition
Toonsi, S., Kafkas, Ş. & Hoehndorf, R., 2023, p. 13-24. 12 p.Research output: Contribution to conference › Paper › peer-review
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Starvar: symptom-based tool for automatic ranking of variants using evidence from literature and genomes
Kafkas, Ș., Abdelhakim, M., Uludag, M., Althagafi, A., Alghamdi, M. & Hoehndorf, R., Dec 2023, In: BMC BIOINFORMATICS. 24, 1, 294.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Using SPARQL to unify queries over data, ontologies, and machine learning models in the PhenomeBrowser knowledgebase
Syed, A. R., Kafkas, S., Kulmanov, M. & Hoehndorf, R., Jan 1 2022, 13th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, SWAT4HCLS 2022. CEUR-WS, p. 97-102 6 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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DeepViral: prediction of novel virus-host interactions from protein sequences and infectious disease phenotypes.
Liu-Wei, W., Kafkas, S., Chen, J., Dimonaco, N. J., Tegner, J. & Hoehndorf, R., Mar 8 2021, In: Bioinformatics (Oxford, England).Research output: Contribution to journal › Article › peer-review
40 Scopus citations -
Linking common human diseases to their phenotypes; development of a resource for human phenomics
Kafkas, S., Althubaiti, S., Gkoutos, G. V., Hoehndorf, R. & Schofield, P. N., Aug 23 2021, In: Journal of Biomedical Semantics. 12, 1Research output: Contribution to journal › Article › peer-review
8 Scopus citations -
Combining lexical and context features for automatic ontology extension.
Althubaiti, S., Kafkas, S., Abdelhakim, M. & Hoehndorf, R., Jan 13 2020, In: Journal of biomedical semantics. 11, 1Research output: Contribution to journal › Article › peer-review
24 Scopus citations -
DDIEM: drug database for inborn errors of metabolism
Abdelhakim, M., McMurray, E., Syed, A. R., Kafkas, S., Kamau, A., Schofield, P. N. & Hoehndorf, R., Jun 11 2020, In: Orphanet Journal of Rare Diseases. 15, 1Research output: Contribution to journal › Article › peer-review
10 Scopus citations -
EMC10 Homozygous Variant Identified in a Family with Global Developmental Delay, Mild Intellectual Disability, and Speech Delay.
Umair, M., Ballow, M., Asiri, A., Alyafee, Y., Al Tuwaijri, A., Alhamoudi, K. M., Aloraini, T., Abdelhakim, M., Althagafi, A. T., Kafkas, S., Alsubaie, L., Alrifai, M. T., Hoehndorf, R., Alfares, A. & Alfadhel, M., Sep 2 2020, In: Clinical Genetics.Research output: Contribution to journal › Article › peer-review
26 Scopus citations