Research output per year
Research output per year
Personal profile
Research Overview
My main research interests are biomedical text/data mining and data integration. I develop methods for analyzing large and heterogeneous data for finding solutions to various problems in the domain of biomedicine.
Key Research Areas
Text/Data Mining, Data Integration, Information Extraction, Named Entity Recognition, Text Classification, Bioinformatics.
Education
Computer Engineering, Ph.D. , Eastern Mediterranean University
2012
Computer Engineering, M.S., Eastern Mediterranean University
2005
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Using SPARQL to unify queries over data, ontologies, and machine learning models in the PhenomeBrowser knowledgebase
Syed, A. R., Kafkas, S., Kulmanov, M. & Hoehndorf, R., Jan 1 2022, 13th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, SWAT4HCLS 2022. CEUR-WS, p. 97-102 6 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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DeepViral: prediction of novel virus-host interactions from protein sequences and infectious disease phenotypes.
Liu-Wei, W., Kafkas, S., Chen, J., Dimonaco, N. J., Tegner, J. & Hoehndorf, R., Mar 8 2021, In: Bioinformatics (Oxford, England).Research output: Contribution to journal › Article › peer-review
21 Scopus citations -
Linking common human diseases to their phenotypes; development of a resource for human phenomics
Kafkas, S., Althubaiti, S., Gkoutos, G. V., Hoehndorf, R. & Schofield, P. N., Aug 23 2021, In: Journal of Biomedical Semantics. 12, 1Research output: Contribution to journal › Article › peer-review
4 Scopus citations -
Combining lexical and context features for automatic ontology extension.
Althubaiti, S., Kafkas, S., Abdelhakim, M. & Hoehndorf, R., Jan 13 2020, In: Journal of biomedical semantics. 11, 1Research output: Contribution to journal › Article › peer-review
12 Scopus citations -
DDIEM: drug database for inborn errors of metabolism
Abdelhakim, M., McMurray, E., Syed, A. R., Kafkas, S., Kamau, A., Schofield, P. N. & Hoehndorf, R., Jun 11 2020, In: Orphanet Journal of Rare Diseases. 15, 1Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
EMC10 Homozygous Variant Identified in a Family with Global Developmental Delay, Mild Intellectual Disability, and Speech Delay.
Umair, M., Ballow, M., Asiri, A., Alyafee, Y., Al Tuwaijri, A., Alhamoudi, K. M., Aloraini, T., Abdelhakim, M., Althagafi, A. T., Kafkas, S., Alsubaie, L., Alrifai, M. T., Hoehndorf, R., Alfares, A. & Alfadhel, M., Sep 2 2020, In: Clinical Genetics.Research output: Contribution to journal › Article › peer-review
12 Scopus citations -
Ontology based mining of pathogen–disease associations from literature
Kafkas, S. & Hoehndorf, R., Sep 18 2019, In: Journal of Biomedical Semantics. 10, 1Research output: Contribution to journal › Article › peer-review
6 Scopus citations -
Ontology based text mining of gene-phenotype associations: application to candidate gene prediction
Kafkas, S. & Hoehndorf, R., Feb 27 2019, In: Database. 2019Research output: Contribution to journal › Article › peer-review
7 Scopus citations