Fatima Zohra Smaili

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6 Article

A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.
He, Y., Yu, H., Huffman, A., Lin, A. Y., Natale, D. A., Beverley, J., Zheng, L., Perl, Y., Wang, Z., Liu, Y., Ong, E., Wang, Y., Huang, P., Tran, L., Du, J., Shah, Z., Shah, E., Desai, R., Huang, H-H., Tian, Y., & 23 othersMerrell, E., Duncan, W. D., Arabandi, S., Schriml, L. M., Zheng, J., Masci, A. M., Wang, L., Liu, H., Smaili, F. Z., Hoehndorf, R., Pendlington, Z. M., Roncaglia, P., Ye, X., Xie, J., Tang, Y-W., Yang, X., Peng, S., Zhang, L., Chen, L., Hur, J., Omenn, G. S., Athey, B. & Smith, B., Oct 21 2022, In: Journal of biomedical semantics. 13, 1
Research output: Contribution to journal › Article › peer-review
2 Scopus citations
QAUST: protein function prediction using structure similarity search, protein interaction and functional sequence motifs
Smaili, F. Z., Tian, S., Roy, A., Alazmi, M., Arold, S. T., Mukherjee, S., Hefty, P. S., Chen, W. & Gao, X., 2020, In: Accepted by Genomics, Proteomics, and Bioinformatics.
Research output: Contribution to journal › Article › peer-review
Semantic similarity and machine learning with ontologies.
Kulmanov, M., Smaili, F. Z., Gao, X. & Hoehndorf, R., Oct 13 2020, In: Briefings in bioinformatics.
Research output: Contribution to journal › Article › peer-review
42 Scopus citations
Formal axioms in biomedical ontologies improve analysis and interpretation of associated data.
Smaili, F. Z., Gao, X. & Hoehndorf, R., Dec 10 2019, In: Bioinformatics (Oxford, England). 36, 7, p. 2229-2236 8 p.
Research output: Contribution to journal › Article › peer-review
9 Scopus citations
Onto2Vec: Joint vector-based representation of biological entities and their ontology-based annotations
Smaili, F. Z., Gao, X. & Hoehndorf, R., Jul 1 2018, In: Bioinformatics. 34, 13, p. i52-i60
Research output: Contribution to journal › Article › peer-review

Open Access
53 Scopus citations
OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction
Smaili, F. Z., Gao, X. & Hoehndorf, R., Nov 8 2018, In: Bioinformatics. 35, 12, p. 2133-2140 8 p.
Research output: Contribution to journal › Article › peer-review
47 Scopus citations

Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations
Fatima Zohra Smaili, Xin Gao & Robert Hoehndorf
06/27/18
1 item of Media coverage
Press/Media: Press / Media

Fatima Zohra Smaili

Fingerprint

Research output

A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.

QAUST: protein function prediction using structure similarity search, protein interaction and functional sequence motifs

Semantic similarity and machine learning with ontologies.

Formal axioms in biomedical ontologies improve analysis and interpretation of associated data.

Onto2Vec: Joint vector-based representation of biological entities and their ontology-based annotations

OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction

Press/Media

Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations