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Didier Barradas Bautista

 https://orcid.org/0000-0002-6464-6607
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20192023

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  • Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study

    Schweke, H., Xu, Q., Tauriello, G., Pantolini, L., Schwede, T., Cazals, F., Lhéritier, A., Fernandez-Recio, J., Rodríguez-Lumbreras, L. A., Schueler-Furman, O., Varga, J. K., Jiménez-García, B., Réau, M. F., Bonvin, A. M. J. J., Savojardo, C., Martelli, P.-L., Casadio, R., Tubiana, J., Wolfson, H. J. & Oliva, R. & 26 others, Barradas-Bautista, D., Ricciardelli, T., Cavallo, L., Venclovas, Č., Olechnovič, K., Guerois, R., Andreani, J., Martin, J., Wang, X., Terashi, G., Sarkar, D., Christoffer, C., Aderinwale, T., Verburgt, J., Kihara, D., Marchand, A., Correia, B. E., Duan, R., Qiu, L., Xu, X., Zhang, S., Zou, X., Dey, S., Dunbrack, R. L., Levy, E. D. & Wodak, S. J., Jun 27 2023, In: PROTEOMICS.

    Research output: Contribution to journal › Article › peer-review

    9 Scopus citations

  • Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment

    Lensink, M. F., Brysbaert, G., Raouraoua, N., Bates, P. A., Giulini, M., Honorato, R. V., van Noort, C., Teixeira, J. M. C., Bonvin, A. M. J. J., Kong, R., Shi, H., Lu, X., Chang, S., Liu, J., Guo, Z., Chen, X., Morehead, A., Roy, R. S., Wu, T. & Giri, N. & 30 others, Quadir, F., Chen, C., Cheng, J., Del Carpio, C. A., Ichiishi, E., Rodriguez-Lumbreras, L. A., Fernandez-Recio, J., Harmalkar, A., Chu, L. S., Canner, S., Smanta, R., Gray, J. J., Li, H., Lin, P., He, J., Tao, H., Huang, S. Y., Roel-Touris, J., Jimenez-Garcia, B., Christoffer, C. W., Jain, A. J., Kagaya, Y., Kannan, H., Nakamura, T., Ricciardelli, T., Barradas-Bautista, D., Cao, Z., Chawla, M., Cavallo, L. & Oliva, R., Dec 2023, In: Proteins: Structure, Function and Bioinformatics. 91, 12, p. 1658-1683 26 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    19 Scopus citations

  • Improving classification of correct and incorrect protein-protein docking models by augmenting the training set

    Barradas Bautista, D., Almajed, A., Oliva, R., Kalnis, P. & Cavallo, L., Feb 2 2023, In: Bioinformatics Advances.

    Research output: Contribution to journal › Article › peer-review

    1 Scopus citations

  • The LightDock Server: Artificial Intelligence-powered modeling of macromolecular interactions.

    Jiménez-García, B., Roel-Touris, J. & Barradas Bautista, D., May 4 2023, In: Nucleic acids research.

    Research output: Contribution to journal › Article › peer-review

    8 Scopus citations

  • A Random Forest Classifier for Protein-Protein Docking Models

    Barradas Bautista, D., Cao, Z., Vangone, A., Oliva, R. & Cavallo, L., Dec 10 2021, In: Bioinformatics Advances.

    Research output: Contribution to journal › Article › peer-review

    8 Scopus citations

  • Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment.

    Lensink, M. F., Brysbaert, G., Mauri, T., Nadzirin, N., Velankar, S., Chaleil, R. A. G., Clarence, T., Bates, P. A., Kong, R., Liu, B., Yang, G., Liu, M., Shi, H., Lu, X., Chang, S., Roy, R. S., Quadir, F., Liu, J., Cheng, J. & Antoniak, A. & 88 others, Czaplewski, C., GiełdoŃ, A., Kogut, M., Lipska, A. G., Liwo, A., Lubecka, E. A., Maszota-Zieleniak, M., Sieradzan, A. K., Ślusarz, R., Wesołowski, P. A., ZiĘba, K., Del Carpio Muñoz, C. A., Ichiishi, E., Harmalkar, A., Gray, J. J., Bonvin, A. M. J. J., Ambrosetti, F., Honorato, R. V., Jandova, Z., Jiménez-García, B., Koukos, P. I., Van Keulen, S., van Noort, C. W., Réau, M., Roel-Touris, J., Kotelnikov, S., Padhorny, D., Porter, K. A., Alekseenko, A., Ignatov, M., Desta, I., Ashizawa, R., Sun, Z., Ghani, U., Hashemi, N., Vajda, S., Kozakov, D., Rosell, M., Rodríguez-Lumbreras, L. A., Fernandez-Recio, J., Karczynska, A., Grudinin, S., Yan, Y., Li, H., Lin, P., Huang, S.-Y., Christoffer, C., Terashi, G., Verburgt, J., Sarkar, D., Aderinwale, T., Wang, X., Kihara, D., Nakamura, T., Hanazono, Y., Gowthaman, R., Guest, J. D., Yin, R., Taherzadeh, G., Pierce, B. G., Barradas Bautista, D., Cao, Z., Cavallo, L., Oliva, R., Sun, Y., Zhu, S., Shen, Y., Park, T., Woo, H., Yang, J., Kwon, S., Won, J., Seok, C., Kiyota, Y., Kobayashi, S., Harada, Y., Takeda-Shitaka, M., Kundrotas, P. J., Singh, A., Vakser, I. A., DapkŪnas, J., Olechnovič, K., Venclovas, Č., Duan, R., Qiu, L., Zhang, S., Zou, X. & Wodak, S. J., Aug 28 2021, In: Proteins.

    Research output: Contribution to journal › Article › peer-review

    67 Scopus citations

  • The CASP13-CAPRI targets as case studies to illustrate a novel scoring pipeline integrating CONSRANK with clustering and interface analyses

    Barradas Bautista, D., Cao, Z., Cavallo, L. & Oliva, R., Sep 16 2020, In: BMC Bioinformatics. 21, S8

    Research output: Contribution to journal › Article › peer-review

    5 Scopus citations

  • Blind prediction of homo- and hetero- protein complexes: The CASP13-CAPRI experiment.

    Lensink, M. F., Brysbaert, G., Nadzirin, N., Velankar, S., Chaleil, R. A. G., Gerguri, T., Bates, P. A., Laine, E., Carbone, A., Grudinin, S., Kong, R., Liu, R.-R., Xu, X.-M., Shi, H., Chang, S., Eisenstein, M., Karczynska, A., Czaplewski, C., Lubecka, E. & Lipska, A. & 85 others, Krupa, P., Mozolewska, M., Golon, Ł., Samsonov, S., Liwo, A., Crivelli, S., Pagès, G., Karasikov, M., Kadukova, M., Yan, Y., Huang, S.-Y., Rosell, M., Rodríguez-Lumbreras, L. A., Romero-Durana, M., Díaz-Bueno, L., Fernandez-Recio, J., Christoffer, C., Terashi, G., Shin, W.-H., Aderinwale, T., Raghavendra Maddhuri Venkata Subraman, S., Kihara, D., Kozakov, D., Vajda, S., Porter, K., Padhorny, D., Desta, I., Beglov, D., Ignatov, M., Kotelnikov, S., Moal, I. H., Ritchie, D. W., Chauvot de Beauchêne, I., Maigret, B., Devignes, M.-D., Echartea, M. E. R., Barradas Bautista, D., Cao, Z., Cavallo, L., Oliva, R., Cao, Y., Shen, Y., Baek, M., Park, T., Woo, H., Seok, C., Braitbard, M., Bitton, L., Scheidman-Duhovny, D., DapkŪnas, J., Olechnovič, K., Venclovas, Č., Kundrotas, P. J., Belkin, S., Chakravarty, D., Badal, V. D., Vakser, I. A., Vreven, T., Vangaveti, S., Borrman, T., Weng, Z., Guest, J. D., Gowthaman, R., Pierce, B. G., Xu, X., Duan, R., Qiu, L., Hou, J., Ryan Merideth, B., Ma, Z., Cheng, J., Zou, X., Koukos, P. I., Roel-Touris, J., Ambrosetti, F., Geng, C., Schaarschmidt, J., Trellet, M. E., Melquiond, A. S. J., Xue, L., Jiménez-García, B., van Noort, C. W., Honorato, R. V., Bonvin, A. M. J. J. & Wodak, S. J., Oct 14 2019, In: Proteins. 87, 12, p. 1200-1221 22 p.

    Research output: Contribution to journal › Article › peer-review

    89 Scopus citations
View all 9 Research outputs