Research Computing Core Labs

Search results

  • 2024

    Vortex Lens: Interactive Vortex Core Line Extraction using Observed Line Integral Convolution

    Rautek, P., Zhang, X., Woschizka, B., Theussl, T. & Hadwiger, M., Jan 1 2024, In: IEEE Transactions on Visualization and Computer Graphics. 30, 1, p. 55-65 11 p.

    Research output: Contribution to journal › Article › peer-review

    1 Scopus citations
  • 2023

    Ageing of juvenile coral grouper (Plectropomus maculatus) reveals year-round spawning and recruitment: Implications for seasonal closures

    Harrison, H. B., Drane, L., Berumen, M. L., Cresswell, B. J., Evans, R. D., Galbraith, G. F., Srinivasan, M., Taylor, B. M., Williamson, D. H. & Jones, G. P., Jun 28 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2001, 20230584.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    2 Scopus citations

  • An online database for einkorn wheat to aid in gene discovery and functional genomics studies

    Sharma, P. K., Ahmed, H. I., Heuberger, M., Koo, D. H., Quiroz-Chavez, J., Adhikari, L., Raupp, J., Cauet, S., Rodde, N., Cravero, C., Callot, C., Yadav, I. S., Kathiresan, N., Athiyannan, N., Ramirez-Gonzalez, R. H., Uauy, C., Wicker, T., Abrouk, M., Gu, Y. Q. & Poland, J. & 3 others, Krattinger, S. G., Lazo, G. R. & Tiwari, V. K., 2023, In: Database. 2023, baad079.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    2 Scopus citations

  • Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study

    Schweke, H., Xu, Q., Tauriello, G., Pantolini, L., Schwede, T., Cazals, F., Lhéritier, A., Fernandez-Recio, J., Rodríguez-Lumbreras, L. A., Schueler-Furman, O., Varga, J. K., Jiménez-García, B., Réau, M. F., Bonvin, A. M. J. J., Savojardo, C., Martelli, P.-L., Casadio, R., Tubiana, J., Wolfson, H. J. & Oliva, R. & 26 others, Barradas-Bautista, D., Ricciardelli, T., Cavallo, L., Venclovas, Č., Olechnovič, K., Guerois, R., Andreani, J., Martin, J., Wang, X., Terashi, G., Sarkar, D., Christoffer, C., Aderinwale, T., Verburgt, J., Kihara, D., Marchand, A., Correia, B. E., Duan, R., Qiu, L., Xu, X., Zhang, S., Zou, X., Dey, S., Dunbrack, R. L., Levy, E. D. & Wodak, S. J., Jun 27 2023, In: PROTEOMICS.

    Research output: Contribution to journal › Article › peer-review

    8 Scopus citations

  • Einkorn genomics sheds light on history of the oldest domesticated wheat

    Ahmed, H., Heuberger, M., Schoen, A., Koo, D.-H., Quiroz-Chávez, J., Adhikari, L., Raupp, J., Cauet, S., Rodde, N., Cravero, C., Callot, C., Lazo, G. R., Kathiresan, N., Sharma, P. K., Moot, I., Yadav, I. S., Singh, L., Saripalli, G., Rawat, N. & Datla, R. & 8 others, Athiyannan, N., Ramirez-Gonzalez, R. H., Uauy, C., Wicker, T., Tiwari, V., Abrouk, M., Poland, J. & Krattinger, S. G., Aug 2 2023, In: Nature.

    Research output: Contribution to journal › Article › peer-review

    27 Scopus citations

  • Evaluation of next-generation high-order compressible fluid dynamic solver on cloud computing for complex industrial flows

    Al Jahdali, R., Kortas, S., Shaikh, M., Dalcin, L. & Parsani, M., Mar 2023, In: Array. 17, 100268.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    3 Scopus citations

  • Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment

    Lensink, M. F., Brysbaert, G., Raouraoua, N., Bates, P. A., Giulini, M., Honorato, R. V., van Noort, C., Teixeira, J. M. C., Bonvin, A. M. J. J., Kong, R., Shi, H., Lu, X., Chang, S., Liu, J., Guo, Z., Chen, X., Morehead, A., Roy, R. S., Wu, T. & Giri, N. & 30 others, Quadir, F., Chen, C., Cheng, J., Del Carpio, C. A., Ichiishi, E., Rodriguez-Lumbreras, L. A., Fernandez-Recio, J., Harmalkar, A., Chu, L. S., Canner, S., Smanta, R., Gray, J. J., Li, H., Lin, P., He, J., Tao, H., Huang, S. Y., Roel-Touris, J., Jimenez-Garcia, B., Christoffer, C. W., Jain, A. J., Kagaya, Y., Kannan, H., Nakamura, T., Ricciardelli, T., Barradas-Bautista, D., Cao, Z., Chawla, M., Cavallo, L. & Oliva, R., Dec 2023, In: Proteins: Structure, Function and Bioinformatics. 91, 12, p. 1658-1683 26 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    19 Scopus citations

  • Improving classification of correct and incorrect protein-protein docking models by augmenting the training set

    Barradas Bautista, D., Almajed, A., Oliva, R., Kalnis, P. & Cavallo, L., Feb 2 2023, In: Bioinformatics Advances.

    Research output: Contribution to journal › Article › peer-review

    1 Scopus citations

  • Inshimtu – A Lightweight In Situ Visualization “Shim”

    Kress, J., Holst, G., Dasari, H. P., Afzal, S., Hoteit, I. & Theussl, T., Aug 25 2023, Lecture Notes in Computer Science. Springer Nature Switzerland, p. 257-268 12 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Multivariate Probabilistic Range Queries for Scalable Interactive 3D Visualization

    Ageeli, A., Jaspe-Villanueva, A., Sicat, R., Mannuss, F., Rautek, P. & Hadwiger, M., Jan 1 2023, In: IEEE Transactions on Visualization and Computer Graphics. 29, 1, p. 646-656 11 p.

    Research output: Contribution to journal › Article › peer-review

    1 Scopus citations

  • The LightDock Server: Artificial Intelligence-powered modeling of macromolecular interactions.

    Jiménez-García, B., Roel-Touris, J. & Barradas Bautista, D., May 4 2023, In: Nucleic acids research.

    Research output: Contribution to journal › Article › peer-review

    7 Scopus citations

  • Visualization and Visual Analytics Approaches for Image and Video Datasets: A Survey

    Afzal, S., Ghani, S., Hittawe, M., Rashid, S. F., Knio, O., Hadwiger, M. & Hoteit, I., Mar 9 2023, In: ACM Transactions on Interactive Intelligent Systems. 13, 1, p. 1-41 41 p.

    Research output: Contribution to journal › Article › peer-review

    23 Scopus citations
  • 2022

    Imaging Oil Recovery from Mixed-Wet Microporous Carbonates

    Hassan, A., Kaprielova, K., Saad, A., Yutkin, M. & Patzek, T., Aug 15 2022, Second International Meeting for Applied Geoscience & Energy. Society of Exploration Geophysicists and American Association of Petroleum Geologists, p. 366-370 5 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Reply to “Comment on ‘Origin of symmetry-forbidden high-order harmonic generation in the time-dependent Kohn-Sham formulation’”

    Zang, X., Shang, C., Zhang, P., Zhu, Y., Zhu, Z. & Schwingenschlögl, U., Apr 6 2022, In: Physical Review A. 105, 4

    Research output: Contribution to journal › Article › peer-review

  • Riemannian Geometry for Scientific Visualization

    Hadwiger, M., Theußl, T. & Rautek, P., Dec 6 2022, Proceedings - SIGGRAPH Asia 2022 Courses. Spencer, S. N. (ed.). Association for Computing Machinery, Inc, 5. (Proceedings - SIGGRAPH Asia 2022 Courses).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
  • 2021

    A novel hybrid adsorption heat transformer – multi-effect distillation (AHT-MED) system for improved performance and waste heat upgrade

    Saren, S., Mitra, S., Miyazaki, T., Ng, K. C. & Thu, K., Sep 16 2021, In: Applied Energy. 305, p. 117744

    Research output: Contribution to journal › Article › peer-review

    20 Scopus citations

  • A Visual Analytics Based Decision Making Environment for COVID-19 Modeling and Visualization

    Afzal, S., Ghani, S., Jenkins-Smith, H. C., Ebert, D. S., Hadwiger, M. & Hoteit, I., Feb 1 2021, 2020 IEEE Visualization Conference (VIS). IEEE, p. 86-90 5 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    21 Scopus citations

  • DeepSVP: Integration of genotype and phenotype for structural variant prioritization using deep learning

    Althagafi, A. T., Alsubaie, L., Kathiresan, N., Mineta, K., Aloraini, T., Almutairi, F., Alfadhel, M., Gojobori, T., Alfares, A. & Hoehndorf, R., Dec 24 2021, In: Bioinformatics.

    Research output: Contribution to journal › Article › peer-review

    6 Scopus citations

  • Influential parameters on 3-D synthetic ground motions in a sedimentary basin derived from global sensitivity analysis

    De Martin, F., Chaljub, E., Thierry, P., Sochala, P., Dupros, F., Maufroy, E., Hadri, B., Benaichouche, A. & Hollender, F., Aug 3 2021, In: Geophysical Journal International.

    Research output: Contribution to journal › Article › peer-review

    7 Scopus citations

  • In Situ Visualization of WRF Data Using Universal Data Junction

    Esposito, A. & Holst, G., Nov 13 2021, Lecture Notes in Computer Science. Springer International Publishing, p. 475-483 9 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Lunar Terrain Coverage Analysis Data Delivery Workflow

    Lee, C.-A., Lee, C., Shaikh, M. A. & Michels, D. L., Nov 3 2021, ASCEND 2021. American Institute of Aeronautics and Astronautics

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Origin of symmetry-forbidden high-order harmonic generation in the time-dependent Kohn-Sham formulation

    Zang, X., Shang, C., Zhang, P., Zhu, Y., Zhu, Z. & Schwingenschlögl, U., Apr 12 2021, In: Physical Review A. 103, 4

    Research output: Contribution to journal › Article › peer-review

    2 Scopus citations

  • Skewness effects on the turbulence structure in a high-speed compressible and multi-component inert mixing layers

    Boukharfane, R., Er-Raiy, A., Parsani, M. & Hadri, B., Jul 28 2021, AIAA AVIATION 2021 FORUM. American Institute of Aeronautics and Astronautics

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Towards an End-to-End Analysis and Prediction System for Weather, Climate, and Marine Applications in the Red Sea

    Hoteit, I., Abualnaja, Y., Afzal, S., Ait-El-Fquih, B., Akylas, T., Antony, C., Dawson, C., Asfahani, K., Brewin, R. J., Cavaleri, L., Cerovecki, I., Cornuelle, B., Desamsetti, S., Attada, R., Dasari, H. P., Sanchez-Garrido, J., Genevier, L., El Gharamti, M., Gittings, J. & Gokul, E. & 44 others, Gopalakrishnan, G., Guo, D., Hadri, B., Hadwiger, M., Hammoud, M. A., Hendershott, M., Hittawe, M., Karumuri, A., Knio, O., Köhl, A., Kortas, S., Krokos, G., Kunchala, R., Issa, L., Lakkis, I., Langodan, S., Lermusiaux, P., Luong, T., Ma, J., Le Maitre, O., Mazloff, M., El Mohtar, S., Papadopoulos, V. P., Platt, T., Pratt, L., Raboudi, N. M. F., Racault, M.-F., Raitsos, D. E., Razak, S., Sanikommu, S. R., Sathyendranath, S., Sofianos, S., Subramanian, A., Sun, R., Titi, E., Toye, H., Triantafyllou, G., Tsiaras, K., Vasou, P., Viswanadhapalli, Y., Wang, Y., Yao, F., Zhan, P. & Zodiatis, G., Jan 2021, In: Bulletin of the American Meteorological Society. 102, 1, p. E99-E122 1 p.

    Research output: Contribution to journal › Article › peer-review

    34 Scopus citations

  • Understanding the transient behavior of the dew point evaporative cooler from the first and second law of thermodynamics

    Lin, J., Thu, K., Karthik, S., Shahzad, M. W., Wang, R. & Chua, K. J., Sep 15 2021, In: Energy Conversion and Management. 244

    Research output: Contribution to journal › Article › peer-review

    16 Scopus citations

  • Vortex criteria can be objectivized by unsteadiness minimization

    Theisel, H., Hadwiger, M., Rautek, P., Theussl, T. & Günther, T., Oct 22 2021, In: Physics of Fluids. 33, 10, p. 107115

    Research output: Contribution to journal › Article › peer-review

    5 Scopus citations
  • 2020

    Evolution and diversity of the wild rice Oryza officinalis complex, across continents genome types, and ploidy levels.

    Shenton, M., Kobayashi, M., Terashima, S., Ohyanagi, H., Copetti, D., Hernández-Hernández, T., Zhang, J., Ohmido, N., Fujita, M., Toyoda, A., Ikawa, H., Fujiyama, A., Furuumi, H., Miyabayashi, T., Kubo, T., Kudrna, D., Wing, R., Yano, K., Nonomura, K.-I. & Sato, Y. & 1 others, Kurata, N., Mar 4 2020, In: Genome biology and evolution. 12, 4, p. 413-428 16 p.

    Research output: Contribution to journal › Article › peer-review

    22 Scopus citations

  • Functional Binding of E-selectin to its Ligands is Enhanced by Structural Features Beyond its Lectin Domain

    Aleisa, F. A., Sakashita, K., Lee, J. M., Abu Samra, D. B. K., Al Alwan, B., Nozue, S., Tehseen, M., Hamdan, S., Habuchi, S., Kusakabe, T. & Merzaban, J., Jan 16 2020, In: Journal of Biological Chemistry. 295, 11, p. jbc.RA119.010910

    Research output: Contribution to journal › Article › peer-review

    13 Scopus citations

  • High-order accurate entropy-stable discontinuous collocated Galerkin methods with the summation-by-parts property for compressible CFD frameworks: Scalable SSDC algorithms and flow solver

    Parsani, M., Boukharfane, R., Nolasco, I. R., Del Rey Fernández, D. C., Zampini, S., Hadri, B. & Dalcin, L., Sep 22 2020, In: Journal of Computational Physics. p. 109844

    Research output: Contribution to journal › Article › peer-review

    28 Scopus citations

  • Mapping geographical inequalities in oral rehydration therapy coverage in low-income and middle-income countries, 2000-17

    Wiens, K. E., Lindstedt, P. A., Blacker, B. F., Johnson, K. B., Baumann, M. M., Schaeffer, L. E., Abbastabar, H., Abd-Allah, F., Abdelalim, A., Abdollahpour, I., Abegaz, K. H., Abejie, A. N., Abreu, L. G., Abrigo, M. R. M., Abualhasan, A., Accrombessi, M. M. K., Acharya, D., Adabi, M., Adamu, A. A. & Adebayo, O. M. & 685 others, Adedoyin, R. A., Adekanmbi, V., Adetokunboh, O. O., Adhena, B. M., Afarideh, M., Ahmad, S., Ahmadi, K., Ahmed, A. E., Ahmed, M. B., Ahmed, R., Akalu, T. Y., Alahdab, F., Al-Aly, Z., Alam, N., Alam, S., Alamene, G. M., Alanzi, T. M., Alcalde-Rabanal, J. E., Ali, B. A., Alijanzadeh, M., Alipour, V., Aljunid, S. M., Almasi, A., Almasi-Hashiani, A., Al-Mekhlafi, H. M., Altirkawi, K. A., Alvis-Guzman, N., Alvis-Zakzuk, N. J., Amini, S., Amit, A. M. L., Andrei, C. L., Anjomshoa, M., Anoushiravani, A., Ansari, F., Antonio, C. A. T., Antony, B., Antriyandarti, E., Arabloo, J., Aref, H. M. A., Aremu, O., Armoon, B., Arora, A., Aryal, K. K., Arzani, A., Asadi-Aliabadi, M., Atalay, H. T., Athari, S. S., Athari, S. M., Atre, S. R., Ausloos, M., Awoke, N., Ayala Quintanilla, B. P., Ayano, G., Ayanore, M. A., Aynalem, Y. A., Azari, S., Azzopardi, P. S., Babaee, E., Babalola, T. K., Badawi, A., Bairwa, M., Bakkannavar, S. M., Balakrishnan, S., Bali, A. G., Banach, M., Banoub, J. A. M., Barac, A., Bärnighausen, T. W., Basaleem, H., Basu, S., Bay, V. D., Bayati, M., Baye, E., Bedi, N., Beheshti, M., Behzadifar, M., Behzadifar, M., Bekele, B. B., Belayneh, Y. M., Bell, M. L., Bennett, D. A., Berbada, D. A., Bernstein, R. S., Bhat, A. G., Bhattacharyya, K., Bhattarai, S., Bhaumik, S., Bhutta, Z. A., Bijani, A., Bikbov, B., Birihane, B. M., Biswas, R. K., Bohlouli, S., Bojia, H. A., Boufous, S., Brady, O. J., Bragazzi, N. L., Briko, A. N., Briko, N. I., Britton, G. B., Burugina Nagaraja, S., Busse, R., Butt, Z. A., Cámera, L. A., Campos-Nonato, I. R., Cano, J., Car, J., Cárdenas, R., Carvalho, F., Castañeda-Orjuela, C. A., Castro, F., Chanie, W. F., Chatterjee, P., Chattu, V. K., Chichiabellu, T. Y., Chin, K. L., Christopher, D. J., Chu, D. T., Cormier, N. M., Costa, V. M., Culquichicon, C., Daba, M. S., Damiani, G., Dandona, L., Dandona, R., Dang, A. K., Darwesh, A. M., Darwish, A. H., Daryani, A., Das, J. K., Das Gupta, R. D., Dash, A. P., Davey, G., Dávila-Cervantes, C. A., Davis, A. C., Davitoiu, D. V., De la Hoz, F. P., Demis, A. B., Demissie, D. B., Demissie, G. D., Demoz, G. T., Denova-Gutiérrez, E., Deribe, K., Desalew, A., Deshpande, A., Dharmaratne, S. D., Dhillon, P., Dhimal, M., Dhungana, G. P., Diaz, D., Dipeolu, I. O., Djalalinia, S., Doyle, K. E., Dubljanin, E., Duko, B., Duraes, A. R., Ebrahimi Kalan, M., Edinur, H. A., Effiong, A., Eftekhari, A., El Nahas, N., El Sayed, I., El Sayed Zaki, M., El Tantawi, M., Elema, T. B., Elhabashy, H. R., El-Jaafary, S. I., Elkout, H., Elsharkawy, A., Elyazar, I. R. F., Endalamaw, A., Endalew, D. A., Eskandarieh, S., Esteghamati, A., Esteghamati, S., Etemadi, A., Ezekannagha, O., Fareed, M., Faridnia, R., Farzadfar, F., Fazlzadeh, M., Feigin, V. L., Fereshtehnejad, S. M., Fernandes, E., Filip, I., Fischer, F., Foigt, N. A., Folayan, M. O., Foroutan, M., Franklin, R. C., Fukumoto, T., Gad, M. M., Gayesa, R. T., Gebre, T., Gebremedhin, K. B., Gebremeskel, G. G., Gesesew, H. A., Gezae, K. E., Ghadiri, K., Ghashghaee, A., Ghimire, P. R., Gill, P. S., Gill, T. K., Ginindza, T. G., Gomes, N. G. M., Gopalani, S. V., Goulart, A. C., Goulart, B. N. G., Grada, A., Gubari, M. I. M., Gugnani, H. C., Guido, D., Guimarães, R. A., Guo, Y., Gupta, R., Hafezi-Nejad, N., Haile, D. H., Hailu, G. B., Haj-Mirzaian, A., Haj-Mirzaian, A., Hamadeh, R. R., Hamidi, S., Handiso, D. W., Haririan, H., Hariyani, N., Hasaballah, A. I., Hasan, M. M., Hasanpoor, E., Hasanzadeh, A., Hassankhani, H., Hassen, H. Y., Hegazy, M. I., Heibati, B., Heidari, B., Hendrie, D., Henry, N. J., Herteliu, C., Heydarpour, F., Hidru, H. D. D., Hird, T. R., Hoang, C. L., Homaie Rad, E. H., Hoogar, P., Hoseini, M., Hossain, N., Hosseini, M., Hosseinzadeh, M., Househ, M., Hsairi, M., Hu, G., Hussen, M. M., Ibitoye, S. E., Igumbor, E. U., Ilesanmi, O. S., Ilic, M. D., Imani-Nasab, M. H., Iqbal, U., Irvani, S. S. N., Islam, S. M. S., Iwu, C. J., Izadi, N., Jaca, A., Jahanmehr, N., Jakovljevic, M., Jalali, A., Jayatilleke, A. U., Jha, R. P., Jha, V., Ji, J. S., Jonas, J. B., Jozwiak, J. J., Kabir, A., Kabir, Z., Kahsay, A., Kalani, H., Kanchan, T., Karami Matin, B., Karch, A., Karim, M. A., Karimi-Sari Surendra Karki, H., Kasaeian, A., Kasahun, G. G., Kasahun, Y. C., Kasaye, H. K., Kassa, G. G., Kassa, G. M., Kayode, G. A., Kazemi Karyani, A., Kebede, M. M., Keiyoro, P. N., Kelbore, A. G., Kengne, A. P., Ketema, D. B., Khader, Y. S., Khafaie, M. A., Khalid, N., Khalilov, R., Khan, E. A., Khan, J., Khan, M. N., Khan, M. S., Khatab, K., Khater, A. M., Khater, M. M., Khayamzadeh, M., Khazaei, M., Khazaei, S., Khosravi, M. H., Khubchandani, J., Kiadaliri, A., Kim, Y. J., Kimokoti, R. W., Kisa, A., Kisa, S., Kissoon, N., Shivakumar, K. M., Kochhar, S., Kolola, T., Komaki, H., Kosen, S., Koul, P. A., Koyanagi, A., Kraemer, M. U. G., Krishan, K., Kugbey, N., Kumar, G. A., Kumar, M., Kumar, P., Kumar, V., Kusuma, D., La Vecchia, C., Lacey, B., Lad, S. D., Lal, D. K., Lam, F., Lami, F. H., Lamichhane, P., Lansingh, V. C., Lasrado, S., Laxmaiah, A., Lee, P. H., LeGrand, K. E., Leili, M., Lenjebo, T. L., Leshargie, C. T., Levine, A. J., Li, S., Linn, S., Liu, S., Liu, S., Lodha, R., Longbottom, J., Lopez, J. C. F., Magdy Abd El Razek, H., Magdy Abd El Razek, M., Mahadeshwara Prasad, Mahasha, P. W., Mahotra, N. B., Majeed, A., Malekzadeh, R., Malta, D. C., Mamun, A. A., Manafi, N., Manda, A. L., Manohar, N. D. D., Mansournia, M. A., Mapoma, C. C., Maravilla, J. C., Martinez, G., Martini, S., Martins-Melo, F. R., Masaka, A., Massenburg, B. B., Mathur, M. R., Mayala, B. K., Mazidi, M., McAlinden, C., Meharie, B. G., Mehndiratta, M. M., Mehta, K. M., Mekonnen, T. C., Meles, G. G., Memiah, P. T. N., Memish, Z. A., Mendoza, W., Menezes, R. G., Mereta, S. T., Meretoja, T. J., Mestrovic, T., Miazgowski, B., Mihretie, K. M., Miller, T. R., Mini, G. K., Mirrakhimov, E. M., Moazen, B., Mohajer, B., Mohamadi-Bolbanabad, A., Mohammad, D. K., Mohammad, K. A., Mohammad, Y., Mohammad Gholi Mezerji, N., Mohammadibakhsh, R., Mohammadifard, N., Mohammed, J. A., Mohammed, S., Mohebi, F., Mokdad, A. H., Molokhia, M., Monasta, L., Moodley, Y., Moore, C. E., Moradi, G., Moradi, M., Moradi-Joo, M., Moradi-Lakeh, M., Moraga, P., Morales, L., Moreno Velásquez, I., Mosapour, A., Mouodi, S., Mousavi, S. M., Mozaffor, M., Muchie, K. F., Mulaw, G. F., Munro, S. B., Muriithi, M. K., Murray, C. J. L., Murthy, G. V. S., Musa, K. I., Mustafa, G., Muthupandian, S., Nabhan, A. F., Naderi, M., Nagarajan, A. J., Naidoo, K. S., Naik, G., Najafi, F., Nangia, V., Nansseu, J. R., Nascimento, B. R., Nazari, J., Ndwandwe, D. E., Negoi, I., Netsere, H. B., Ngunjiri, J. W., Nguyen, C. T., Nguyen, H. L. T., Nguyen, T. H., Nigatu, D., Nigatu, S. G., Ningrum, D. N. A., Nnaji, C. A., Nojomi, M., Nong, V. M., Norheim, O. F., Noubiap, J. J., Nouraei Motlagh, S., Oancea, B., Ogah, O. S., Ogbo, F. A., Oh, I. H., Olagunju, A. T., Olagunju, T. O., Olusanya, B. O., Olusanya, J. O., Onwujekwe, O. E., Oren, E., Ortega-Altamirano, D. V., Osarenotor, O., Osei, F. B., Owolabi, M. O., P A, M., Padubidri, J. R., Pakhale, S., Patel, S. K., Paternina-Caicedo, A. J., Pathak, A., Patton, G. C., Paudel, D., Paulos, K., Pepito, V. C. F., Pereira, A., Perico, N., Pervaiz, A., Pescarini, J. M., Piroozi, B., Pirsaheb, M., Postma, M. J., Pourjafar, H., Pourmalek, F., Pourshams, A., Poustchi, H., Prada, S. 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M., Senthilkumaran, S., Sepanlou, S. G., Serván-Mori, E., Shabaninejad, H., Shafieesabet, A., Shaikh, M. A., Shalash, A. S., Shallo, S. A., Shams-Beyranvand, M., Shamsi, M. B., Shamsizadeh, M., Shannawaz, M., Sharafi, K., Sharifi, H., Shehata, H. S., Sheikh, A., Shetty, B. S. K., Shibuya, K., Shiferaw, W. S., Shifti, D. M., Shigematsu, M., Shin, J. I., Shiri, R., Shirkoohi, R., Siabani, S., Siddiqi, T. J., Silva, D. A. S., Singh, A., Singh, J. A., Singh, N. P., Singh, V., Sisay, M. M., Skiadaresi, E., Sobhiyeh, M. R., Sokhan, A., Soltani, S., Somayaji, R., Soofi, M., Sorrie, M. B., Soyiri, I. N., Sreeramareddy, C. T., Sudaryanto, A., Sufiyan, M. B., Suleria, H. A. R., Sultana, M., Sunguya, B. F., Sykes, B. L., Tabarés-Seisdedos, R., Tabuchi, T., Tadesse, D. B., Tarigan, I. U., Tasew, A. A., Tefera, Y. M., Tekle, M. G., Temsah, M. H., Tesfay, B. E., Tesfay, F. H., Tessema, B., Tessema, Z. T., Thankappan, K. R., Thomas, N., Toma, A., Topor-Madry, R., Tovani-Palone, M. R., Traini, E., Tran, B. X., Tran, K. B., Ullah, I., Unnikrishnan, B., Usman, M. S., Uzochukwu, B. S. C., Valdez, P. R., Varughese, S., Violante, F. S., Vollmer, S., Whawariat, F. G., Waheed, Y., Wallin, M. T., Wang, Y., Wang, Y. P., Weaver, M., Weji, B. G., Weldesamuel, G. T., Welgan, C. A., Werdecker, A., Westerman, R., Wiangkham, T., Wiysonge, C. S., Wolde, H. F., Wondafrash, D. Z., Wonde, T. E., Worku, G. T., Wu, A. M., Xu, G., Yadollahpour, A., Yahyazadeh Jabbari, S. H., Yamada, T., Yatsuya, H., Yeshaneh, A., Yilgwan, C. S., Yilma, M. T., Yip, P., Yisma, E., Yonemoto, N., Yoon, S. J., Younis, M. Z., Yousefifard, M., Yousof, H. A. S. A., Yu, C., Yusefzadeh, H., Zadey, S., Zaidi, Z., Zaman, S. B., Zamani, M., Zandian, H., Zepro, N. B., Zerfu, T. A., Zhang, Y., Zhao, X. J. G., Ziapour, A., Zodpey, S., Zuniga, Y. M. H., Hay, S. I. & Reiner, R. C., Aug 1 2020, In: The Lancet Global Health. 8, 8, p. e1038-e1060 1 p.

    Research output: Contribution to journal › Article › peer-review

    24 Scopus citations

  • Performance study of sustained petascale direct numerical simulation on Cray XC40 systems

    Hadri, B., Parsani, M., Hutchinson, M., Heinecke, A., Dalcin, L. & Keyes, D. E., Mar 17 2020, In: Concurrency and Computation: Practice and Experience.

    Research output: Contribution to journal › Article › peer-review

    9 Scopus citations

  • Steam-Assisted Chemical Vapor Deposition of Zeolitic Imidazolate Framework

    Huang, J.-K., Saito, N., Cai, Y., Wan, Y., Cheng, C.-C., Li, M., Shi, J., Tamada, K., Tung, V., Li, S. & Li, L.-J., Apr 1 2020, In: ACS Materials Letters. 2, 5, p. 485-491 7 p.

    Research output: Contribution to journal › Article › peer-review

    29 Scopus citations

  • Towards an HPC Service Oriented Hybrid Cloud Architecture Designed for Interactive Workflows

    Kortas, S. & Shaikh, M. A., 2020, 2020 IEEE/ACM HPC for Urgent Decision Making (UrgentHPC). IEEE

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations
  • 2019

    A Preliminary Metagenome Analysis Based on a Combination of Protein Domains

    Igarashi, Y., Mori, D., Mitsuyama, S., Yoshitake, K., Ono, H., Watanabe, T., Taniuchi, Y., Sakami, T., Kuwata, A., Kobayashi, T., Ishino, Y., Watabe, S., Gojobori, T. & Asakawa, S., Apr 29 2019, In: Proteomes. 7, 2, p. 19

    Research output: Contribution to journal › Article › peer-review

  • Expression and Purification of Vaccinia Virus DNA Topoisomerase IB Produced in the Silkworm–Baculovirus Expression System

    Xu, J., Lee, J. M., Tatsuke, T., Ebihara, T., Masuda, A., Hino, M., Morokuma, D., Fujita, R., Mon, H., Kusakabe, T. & Takahashi, M., Jun 5 2019, In: Molecular Biotechnology. 61, 8, p. 622-630 9 p.

    Research output: Contribution to journal › Article › peer-review

    5 Scopus citations

  • Expression of the thermostable Moloney murine leukemia virus reverse transcriptase by silkworm-baculovirus expression system

    Yano, T., Lee, J. M., Xu, J., Morifuji, Y., Masuda, A., Hino, M., Morokuma, D., Fujita, R., Takahashi, M., Kusakabe, T. & Mon, H., Feb 26 2019, In: Journal of Asia-Pacific Entomology. 22, 2, p. 453-457 5 p.

    Research output: Contribution to journal › Article › peer-review

    9 Scopus citations

  • Geometry-Based Self-Assembly of Histone–DNA Nanostructures at Single-Nucleotide Resolution

    Serag, M. F., Aikeremu, A., Tsukamoto, R., Piwonski, H. M., Abadi, M., Kaji, N., Dwyer, J. R., Baba, Y. & Habuchi, S., Jun 25 2019, In: ACS Nano. 13, 7, p. 8155-8168 14 p.

    Research output: Contribution to journal › Article › peer-review

    6 Scopus citations

  • Global, regional, and national burden of neurological disorders, 1990–2016: a systematic analysis for the Global Burden of Disease Study 2016

    Feigin, V. L., Nichols, E., Alam, T., Bannick, M. S., Beghi, E., Blake, N., Culpepper, W. J., Dorsey, E. R., Elbaz, A., Ellenbogen, R. G., Fisher, J. L., Fitzmaurice, C., Giussani, G., Glennie, L., James, S. L., Johnson, C. O., Kassebaum, N. J., Logroscino, G., Marin, B. & Mountjoy-Venning, W. C. & 490 others, Nguyen, M., Ofori-Asenso, R., Patel, A. P., Piccininni, M., Roth, G. A., Steiner, T. J., Stovner, L. J., Szoeke, C. E. I., Theadom, A., Vollset, S. E., Wallin, M. T., Wright, C., Zunt, J. R., Abbasi, N., Abd-Allah, F., Abdelalim, A., Abdollahpour, I., Aboyans, V., Abraha, H. N., Acharya, D., Adamu, A. A., Adebayo, O. M., Adeoye, A. M., Adsuar, J. C., Afarideh, M., Agrawal, S., Ahmadi, A., Ahmed, M. B., Aichour, A. N., Aichour, I., Aichour, M. T. E., Akinyemi, R. O., Akseer, N., Al-Eyadhy, A., Al-Shahi Salman, R., Alahdab, F., Alene, K. A., Aljunid, S. M., Altirkawi, K., Alvis-Guzman, N., Anber, N. H., Antonio, C. A. T., Arabloo, J., Aremu, O., Ärnlöv, J., Asayesh, H., Asghar, R. J., Atalay, H. T., Awasthi, A., Ayala Quintanilla, B. P., Ayuk, T. B., Badawi, A., Banach, M., Banoub, J. A. M., Barboza, M. A., Barker-Collo, S. L., Bärnighausen, T. W., Baune, B. T., Bedi, N., Behzadifar, M., Behzadifar, M., Béjot, Y., Bekele, B. B., Belachew, A. B., Bennett, D. A., Bensenor, I. M., Berhane, A., Beuran, M., Bhattacharyya, K., Bhutta, Z. A., Biadgo, B., Bijani, A., Bililign, N., Bin Sayeed, M. S., Blazes, C. K., Brayne, C., Butt, Z. A., Campos-Nonato, I. R., Cantu-Brito, C., Car, M., Cárdenas, R., Carrero, J. J., Carvalho, F., Castañeda-Orjuela, C. A., Castro, F., Catalá-López, F., Cerin, E., Chaiah, Y., Chang, J. C., Chatziralli, I., Chiang, P. P. C., Christensen, H., Christopher, D. J., Cooper, C., Cortesi, P. A., Costa, V. M., Criqui, M. H., Crowe, C. S., Damasceno, A. A. M., Daryani, A., De la Cruz-Góngora, V., De La Hoz, F. P., De Leo, D., Degefa, M. G., Demoz, G. T., Deribe, K., Dharmaratne, S. 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J., Nourollahpour Shiadeh, M., Nyasulu, P. S., Ogbo, F. A., Oh, I. H., Olagunju, A. T., Olagunju, T. O., Olivares, P. R., Onwujekwe, O. E., Oren, E., Owolabi, M. O., A, M. P., Pakpour, A. H., Pan, W. H., Panda-Jonas, S., Pandian, J. D., Patel, S. K., Pereira, D. M., Petzold, M., Pillay, J. D., Piradov, M. A., Polanczyk, G. V., Polinder, S., Postma, M. J., Poulton, R., Poustchi, H., Prakash, S., Prakash, V., Qorbani, M., Radfar, A., Rafay, A., Rafiei, A., Rahim, F., Rahimi-Movaghar, V., Rahman, M., Rahman, M. H. U., Rahman, M. A., Rajati, F., Ram, U., Ranta, A., Rawaf, D. L., Rawaf, S., Reinig, N., Reis, C., Renzaho, A. M. N., Resnikoff, S., Rezaeian, S., Rezai, M. S., Rios González, C. M., Roberts, N. L. S., Roever, L., Ronfani, L., Roro, E. M., Roshandel, G., Rostami, A., Sabbagh, P., Sacco, R. L., Sachdev, P. S., Saddik, B., Safari, H., Safari-Faramani, R., Safi, S., Safiri, S., Sagar, R., Sahathevan, R., Sahebkar, A., Sahraian, M. A., Salamati, P., Salehi Zahabi, S., Salimi, Y., Samy, A. M., Sanabria, J., Santos, I. S., Santric Milicevic, M. M., Sarrafzadegan, N., Sartorius, B., Sarvi, S., Sathian, B., Satpathy, M., Sawant, A. R., Sawhney, M., Schneider, I. J. C., Schöttker, B., Schwebel, D. C., Seedat, S., Sepanlou, S. G., Shabaninejad, H., Shafieesabet, A., Shaikh, M. A., Shakir, R. A., Shams-Beyranvand, M., Shamsizadeh, M., Sharif, M., Sharif-Alhoseini, M., She, J., Sheikh, A., Sheth, K. N., Shigematsu, M., Shiri, R., Shirkoohi, R., Shiue, I., Siabani, S., Siddiqi, T. J., Sigfusdottir, I. D., Sigurvinsdottir, R., Silberberg, D. H., Silva, J. P., Silveira, D. G. A., Singh, J. A., Sinha, D. N., Skiadaresi, E., Smith, M., Sobaih, B. H., Sobhani, S., Soofi, M., Soyiri, I. N., Sposato, L. A., Stein, D. J., Stein, M. B., Stokes, M. A., Sufiyan, M. B., Sykes, B. L., Sylaja, P., Tabarés-Seisdedos, R., Te Ao, B. J., Tehrani-Banihashemi, A., Temsah, M. H., Temsah, O., Thakur, J. S., Thrift, A. G., Topor-Madry, R., Tortajada-Girbés, M., Tovani-Palone, M. R., Tran, B. X., Tran, K. B., Truelsen, T. C., Tsadik, A. G., Tudor Car, L., Ukwaja, K. N., Ullah, I., Usman, M. S., Uthman, O. A., Valdez, P. R., Vasankari, T. J., Vasanthan, R., Veisani, Y., Venketasubramanian, N., Violante, F. S., Vlassov, V., Vosoughi, K., Vu, G. T., Vujcic, I. S., Wagnew, F. S., Waheed, Y., Wang, Y. P., Weiderpass, E., Weiss, J., Whiteford, H. A., Wijeratne, T., Winkler, A. S., Wiysonge, C. S., Wolfe, C. D. A., Xu, G., Yadollahpour, A., Yamada, T., Yano, Y., Yaseri, M., Yatsuya, H., Yimer, E. M., Yip, P., Yisma, E., Yonemoto, N., Yousefifard, M., Yu, C., Zaidi, Z., Zaman, S. B., Zamani, M., Zandian, H., Zare, Z., Zhang, Y., Zodpey, S., Naghavi, M., Murray, C. J. L. & Vos, T., May 1 2019, In: The Lancet Neurology. 18, 5, p. 459-480 22 p.

    Research output: Contribution to journal › Article › peer-review

    2856 Scopus citations

  • Improved CPT system with less voltage stress and sensitivity using a step-down transformer on receiving side

    Mostafa, T. M. A., Muharam, A., Hu, A. P. & Hattori, R., Aug 28 2019, In: IET Power Electronics. 12, 10, p. 2634-2641 8 p.

    Research output: Contribution to journal › Article › peer-review

    7 Scopus citations

  • Optimal silkworm larva host for high-level production of Mus musculus IL-4 using a baculovirus expression vector system

    Kobayashi, M., Xu, J., Kakino, K., Masuda, A., Hino, M., Fujimoto, N., Minamihata, K., Kamiya, N., Mon, H., Iida, H., Takahashi, M., Kusakabe, T. & Man Lee, J., Dec 31 2019, In: Journal of Asia-Pacific Entomology. 23, 1, p. 268-273 6 p.

    Research output: Contribution to journal › Article › peer-review

    2 Scopus citations

  • Performance Study of Sustained Petascale Direct Numerical Simulation on Cray XC40 Systems (Trinity, Shaheen2 and Cori)

    Hadri, B., Parsani, M., Hutchinson, M., Heinecke, A., Dalcin, L. & Keyes, D. E., 2019, Cray User Group 2019. Cray User Group

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • RedSeaAtlas: A Visual Analytics Tool for Spatio-temporal Multivariate Data of the Red Sea

    Afzal, S., Ghani, S., Tissington, G., Langodan, S., Dasari, H. P., Raitsos, D., Gittings, J., Jamil, T., Srinivasan, M. & Hoteit, I., 2019, EnvirVis 2019 - Workshop on Visualisation in Environmental Sciences. Fellner, D. (ed.). The Eurographics Association, p. 25-32 8 p. (EnvirVis 2019 - Workshop on Visualisation in Environmental Sciences).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • The state of the art in visual analysis approaches for ocean and atmospheric datasets

    Afzal, S., Hittawe, M. M., Ghani, S., Jamil, T., Knio, O., Hadwiger, M. & Hoteit, I., Jul 10 2019, In: Computer Graphics Forum. 38, 3, p. 881-907 27 p.

    Research output: Contribution to journal › Article › peer-review

    12 Scopus citations

  • Time-Dependent Flow seen through Approximate Observer Killing Fields

    Hadwiger, M., Mlejnek, M., Theußl, T. & Rautek, P., Jan 2019, In: IEEE Transactions on Visualization and Computer Graphics. 25, 1, p. 1257-1266 10 p., 8440037.

    Research output: Contribution to journal › Article › peer-review

    26 Scopus citations

  • Understanding Metadata Latency with MDWorkbench

    Kunkel, J. M. & Markomanolis, G., Jan 25 2019, Lecture Notes in Computer Science. Springer International Publishing, p. 75-88 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations
  • 2018

    A Fault-Tolerant HPC Scheduler Extension for Large and Operational Ensemble Data Assimilation:Application to the Red Sea

    Toye, H., Kortas, S., Zhan, P. & Hoteit, I., Apr 26 2018, In: Journal of Computational Science. 27, p. 46-56 11 p.

    Research output: Contribution to journal › Article › peer-review

    12 Scopus citations

  • Amorphous-cathode-route towards low temperature SOFC

    Cavallaro, A., Pramana, S. S., Ruiz-Trejo, E., Sherrell, P. C., Ware, E., Kilner, J. A. & Skinner, S. J., 2018, In: Sustainable Energy & Fuels. 2, 4, p. 862-875 14 p.

    Research output: Contribution to journal › Article › peer-review

    27 Scopus citations

  • Crystal structure and surface characteristics of Sr-doped GdBaCo2O6−δ double perovskites: oxygen evolution reaction and conductivity

    Pramana, S. S., Cavallaro, A., Li, C., Handoko, A. D., Chan, K. W., Walker, R. J., Regoutz, A., Herrin, J. S., Yeo, B. S., Payne, D. J., Kilner, J. A., Ryan, M. P. & Skinner, S. J., 2018, In: Journal of Materials Chemistry A. 6, 13, p. 5335-5345 11 p.

    Research output: Contribution to journal › Article › peer-review

    42 Scopus citations

  • Large-Scale System Monitoring Experiences and Recommendations Workshop paper: HPCMASPA 2018

    Ahlgren, V., Andersson, S., Brandt, J., Cardo, N. P., Chunduri, S., Enos, J., Fields, P., Gentile, A., Gerber, R., Gienger, M., Greenseid, J., Greiner, A., Hadri, B., He, Y., Hoppe, D., Kaila, U., Kelly, K., Klein, M., Kristiansen, A. & Leak, S. & 9 others, Mason, M., Pedretti, K., Piccinali, J.-G., Repik, J., Rogers, J., Salminen, S., Showerman, M., Whitney, C. & Williams, J., 2018, 2018 IEEE International Conference on Cluster Computing (CLUSTER). IEEE, p. 532-542 11 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    8 Scopus citations

  • Multiple GPUs using MPI and OpenACC

    Feki, S., Al-Jarro, A. & Bagci, H., Feb 2018, In: Applied Computational Electromagnetics Society Journal. 33, 2, p. 164-167 4 p.

    Research output: Contribution to journal › Article › peer-review